Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g260 ATGGGAAGGGCAACAAGGTGGTTCAAGGGCTTGTTTGGGTTGAAGAGAGACAAGGAACACAAGGACAATTCAAATCCCGGCGACCGGAAGGACAAGAGTAGGTGGAGTTCTGGCCATTCCGGGAGGGACTCCGTTGGGTTGTGTCACAATCCAACCACTATTCCGCCGAACATATCGGCGGCGGAGGCAGCTTGGCTAAGATCTTACTACACCGACACTGAGAACGAGCAGAACAAGCATGCAATTGCAGTGGCTGCTGCCACGGCGGCGGCCGCCGACGCTGCCGTGGCTGCCGCTCAAGCGGCGGTGGCCGTCGTCCGACTCACCAGCCACGGCAGAGGCACCATGTTCGGTGGTGGCCGTGAGAGGTGGGGTGCTGTGAAGATTCAGACTGTTTTTCGAGGATACTTGGCGAGGAAAGCCCTGAGAGCTCTGAAAGGACTGGTGAAGTTACAAGCGCTGGTCAGAGGCTATTTGGTGAGGAAGCAAGCCACAGCCACACTTCACGGTATGCAGGCTCTGATAAGAGCCCAGGCCACAGTTCGAGCCCAGAAAGCTCGAGAGCTGATCAGCAATGAGAAAAGATTCGAAATCCAAACTAGAAAATCTATGGAAAGGTTTGATGAGAGTAGGAGTGAGCACACAGCATCAATCCACAGCAGAAGGCTTTCAGCATCTCTCGACACTACTTTCAACGCCATTGATGGAAGCCCAAAGATTGTGGAAGTTGATACTGGGAGGCCTAAGTCCAGATCCCGGAGAACCAACACATCGGTTTCAGATTCAGGCGATGACCAGCATTACCAAACACTCTCCTCCCCCCTCCCATGTCGAACTCCAATTCCAGTTCCAGTCCGTTTATCAACACCCGATCACCGCAATTATCAAGACTCCGACTGGGGTTTAACGGGTGACGAATGCAGGTTCTCTACTGCCCAAAGCACCCCTAGGTTTATGAATTCAGAAAGGTCCAATGTGCCGATTACACCGGCCAAGACCGTATGCGCTGACAGCTTCTTCCGGCAGTACACAAATTTCCCAAATTACATGGCCAATACACAATCGTTTAAGGCTAAATTAAGGTCTCACAGTGCTCCAAAACAACGGCCGGAGCCAGGGCCTAAGAAGAGGCTTTCACTCAATGAAATGATGGAGTCAAGGAGCAGCCTAAGTGGGGTTAAGATGCAGAGATCATGCTCAAGAGTTCAAGAAGCCATTAATTTTAAAAATGCTGTGATGGGGAAGCTTGAGAGACCCTCAGAGATTGTTAGAGAGGCAGAGAGATGCAACTTGCAGAGGAGATGGTAA 1308 51.45 MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRSYYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELISNEKRFEIQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEIVREAERCNLQRRW* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2439158 2441049 - Vvi11g260 Vvi11g260 771701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g260 435 MobiDBLite consensus disorder prediction 252 276 - -
Vvi11g260 435 MobiDBLite consensus disorder prediction 17 51 - -
Vvi11g260 435 MobiDBLite consensus disorder prediction 358 377 - -
Vvi11g260 435 SMART iq_5 121 143 IPR000048 GO:0005515
Vvi11g260 435 SMART iq_5 144 165 IPR000048 GO:0005515
Vvi11g260 435 MobiDBLite consensus disorder prediction 238 290 - -
Vvi11g260 435 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Vvi11g260 435 Pfam Protein of unknown function (DUF4005) 316 392 IPR025064 -
Vvi11g260 435 Pfam IQ calmodulin-binding motif 124 143 IPR000048 GO:0005515
Vvi11g260 435 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515
Vvi11g260 435 MobiDBLite consensus disorder prediction 17 38 - -
Vvi11g260 435 PANTHER IQ-DOMAIN 5-RELATED 1 421 - -
Vvi11g260 435 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Vvi11g260 435 PANTHER - 1 421 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g268 Vvi11g260 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g260 - - vvi:100245766 827.009