Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g29 ATGAGATCAAATGAGATCCCACATATGATACAAACAATGTGTATGCCTGAGAAAACGATGCATTTGGGCGCTGTGACGACGCTGCTGCTGGCGTCGCAGTTCATGATTTTCATCCCAGCCGTCGTCTCCGACAAAACCAAGCACATTCCCTCCGATACCTCCAAGCTAGACGCCTGGATCGCCACCAACATCCGGGAATACCGGCAGCGAATATGGGAGAGCAAAAAGGGCCTGCACTCATCTCTCGATCCTATACTCGTCGCCGCCGAGGCAGAAGTGAATGTGATCAAGGTCAGAAAAGATGGCACCGGCGATTTCAAGACGATCACCGACGCTCTCAACAGCATCCCCAAGGGCAACCTCAAGCGCACCGTCATATGGATCGGCGGCGGCGAGTACTGGGAGAAGATCACCATTGATCGGTCCAAGCCGTTCATCACTTTGTACGGATCGACGGCTGATATGCCGTCGATAACGTACGACGGAACGGCGTTCAAGTACGGAACAGTCGACAGCGCCACCGTGGCGGTTGAGTCGGACTACTTCATGGCCGTTAATATTGCATTTGTGAATTCAGCTCCTATGCCAGACGGAAAAAGGGTGGGAGCTCAGGCAGTGGCCATGAGGATCTCCGGCGACAAAGCAGCATTCCACAACTGCATGTTCATAGGGTTTCAAGACACCCTTTGTGACGACAGGGGCAGACATTTCTTCAAGGACTGCCAAATCCAGGGCACCGTTGATTTCATCTTTGGGGACGGCAAATCACTCTACTTGAACACAATGATACAATCAGTTGCAAAGGGCGTGGGCGTGATCACAGCTCAGGCAAGGGAAAACGTGGCTGATACCAGCGGATTCGCCTTCGTCCACTGCAACATATCCGGCAGCGGAGACACTTATCTCGGCCGAGCATGGAGGTTGAGGCCCAGAGTGGTGTTTGCTTACACCTACATGGGCACTCTCATCAACGGCGAAGGTTGGTCGGATAACTTGCATGCTGATCGTGACAAGACTGTATACTATGGGGAGTACATGTGCGAAGGACCAGGAGCAACCCCGTCTGGCCGAGTTAAATTTGCGAAGTTACTGACTGGTGAAGAAGCAAAGCCCTTCTTGAGCATGACCTACATCAATGGCAACAAGTGGCTTCTGCCACCTCCCAATTATGTGTAG 1176 52.38 MRSNEIPHMIQTMCMPEKTMHLGAVTTLLLASQFMIFIPAVVSDKTKHIPSDTSKLDAWIATNIREYRQRIWESKKGLHSSLDPILVAAEAEVNVIKVRKDGTGDFKTITDALNSIPKGNLKRTVIWIGGGEYWEKITIDRSKPFITLYGSTADMPSITYDGTAFKYGTVDSATVAVESDYFMAVNIAFVNSAPMPDGKRVGAQAVAMRISGDKAAFHNCMFIGFQDTLCDDRGRHFFKDCQIQGTVDFIFGDGKSLYLNTMIQSVAKGVGVITAQARENVADTSGFAFVHCNISGSGDTYLGRAWRLRPRVVFAYTYMGTLINGEGWSDNLHADRDKTVYYGEYMCEGPGATPSGRVKFAKLLTGEEAKPFLSMTYINGNKWLLPPPNYV* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 521621 524349 + Vvi11g29 Vvi11g29 771470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g29 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 24 389 - -
Vvi11g29 391 Gene3D - 91 386 IPR012334 -
Vvi11g29 391 SUPERFAMILY Pectin lyase-like 94 384 IPR011050 -
Vvi11g29 391 Pfam Pectinesterase 97 381 IPR000070 GO:0030599|GO:0042545
Vvi11g29 391 PANTHER PECTINESTERASE 24 389 - -
Vvi11g29 391 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g29 K01051 - vvi:100244050 777.704