Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g318 ATGCCGGTGCCACCCCAGACGACTCATCCTTCAGTGAGGGTTGTGAAACCAGAATCCCCAAGATCGCGACCAAGACCCAATATTGATGTGAAAGATGGTACTCCAAAGAAGCAAAAACAATGCAACTGCAAACACTCTCGATGCTTGAAATTGTATTGTGAGTGTTTTGCATCTGGAATATATTGTGATGGGTGTAACTGTGTAAATTGTCACAATAATGTTGAAAATGAGGCTGCTAGGCGAGAAGCTGTTGAAGTTACCTTGGAGCGTAATCCAAATGCTTTCAGGCCAAAAATTGCTAGCAGTCCACATGGAGCTCGGGATAGCAGGGAGGAGTCTGGGGAAGCTTTAGTGTTGGGAAAGCACAACAAGGGATGCCATTGCAAGAAATCAGGGTGTTTAAAAAAATACTGTGAGTGCTTCCAAGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAGGCTCTCTTCCATGGAGACCATGCCAACAGCATGGCATATATCCAGCAGGCTGCTAATGCTGCCATCACTGGAGCTATTGGATCCTCTGGCTTTGGATCTCCTCCAGTATCCAAGAAGAGAAAAGGTCAGGAACTGTTTTATGGGCCGACATCCAAGGATCCGTCTCTTCACAGGCTTGCACAATTCCAACAGGCAAGCCTTACCAAAGCATCTGTAACCACCTCTTCATTGTCTTCCACCCCTGTTTCTCGTGTCCCTAACAGTGCAGCATCAGGCACCTCAAAATTTACTTACAGGTCTCTCTTAGCAGACATCATTCAACCGCAGGACTTGAAGGAGCTTTGCTCTGTTCTGGTGGTAGTGTCTGAAGAAGCTGCCAGGACATTTGCAGACAAAAGAAATCTGGTGGAAAAGCCTGCAGAAGAACAGGTAGAAACTTCTCGTGCTTCATCGACTCAAGACAGGTTACAAAGCCAGAAGGAATCTGACATTGAGAAAGCAGTGGCTGATGATTGCTCAAGTAGAAACCAGGCTGATAAACTTGGGCCTGATGATTCCAGCTCAGATGGTGGGGATGTGCCAAAAGGGAGGCCAATGTCTCCTGGAACCCTAGCATTGATGTGTGATGAACAAGATACAATGTTCATGGCAGCTGCCTCCCCTAATGTGTTAATGGGCCATAGCTGCAACACATCTTCACAATTGCCTTATGGGCAAGGTATAACAGAGGCCTATGCGGAGCAGGAAAGGATTATCTTGACTAAGTTTCGAGATTGTCTCAACAGGCTCATAACTTTTGGAGAAATTAAAGAAACAAAGTGCTCCTCGCTAGCCAGAACTGAATCAGGAGGTCAAAATGAGCCATTCAGCAATGGCCCTGCAAATGCCAGAACCGATACTGGCAATCAACAGGTGCCTGTTAGCAATGGTGTTTCAAAACCTCCCTTTCCTCCAGCAACCAAGATGTCTCAGACGGTCACTGCAGCCGCCGCTTCTCCCAATAATACCCTGCTTTCAAAACCTTCAACCCACACTGAAAATGGGGATATAAATCTAAAGACCGAAAAAGAGTTGTAA 1575 45.97 MPVPPQTTHPSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGEALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANSMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTKASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTFADKRNLVEKPAEEQVETSRASSTQDRLQSQKESDIEKAVADDCSSRNQADKLGPDDSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMAAASPNVLMGHSCNTSSQLPYGQGITEAYAEQERIILTKFRDCLNRLITFGEIKETKCSSLARTESGGQNEPFSNGPANARTDTGNQQVPVSNGVSKPPFPPATKMSQTVTAAAASPNNTLLSKPSTHTENGDINLKTEKEL* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3008276 3017867 + Vvi11g318 Vvi11g318 771759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g318 524 MobiDBLite consensus disorder prediction 444 476 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 197 218 - -
Vvi11g318 524 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 8 502 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 484 514 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 1 38 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 324 339 - -
Vvi11g318 524 PANTHER TESMIN/TSO1-RELATED 8 502 IPR028307 -
Vvi11g318 524 MobiDBLite consensus disorder prediction 444 524 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 304 370 - -
Vvi11g318 524 ProSiteProfiles CRC domain profile. 37 161 IPR005172 -
Vvi11g318 524 MobiDBLite consensus disorder prediction 16 38 - -
Vvi11g318 524 SMART CXC_2 121 162 IPR033467 -
Vvi11g318 524 SMART CXC_2 36 76 IPR033467 -
Vvi11g318 524 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 124 158 IPR005172 -
Vvi11g318 524 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 38 73 IPR005172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g451 Vvi11g318 ECH
Vvi4g315 Vvi11g318 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13722 PF03638 TCR 2.70E-12 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g318 - - vvi:100249023 996.497