Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g318 | ATGCCGGTGCCACCCCAGACGACTCATCCTTCAGTGAGGGTTGTGAAACCAGAATCCCCAAGATCGCGACCAAGACCCAATATTGATGTGAAAGATGGTACTCCAAAGAAGCAAAAACAATGCAACTGCAAACACTCTCGATGCTTGAAATTGTATTGTGAGTGTTTTGCATCTGGAATATATTGTGATGGGTGTAACTGTGTAAATTGTCACAATAATGTTGAAAATGAGGCTGCTAGGCGAGAAGCTGTTGAAGTTACCTTGGAGCGTAATCCAAATGCTTTCAGGCCAAAAATTGCTAGCAGTCCACATGGAGCTCGGGATAGCAGGGAGGAGTCTGGGGAAGCTTTAGTGTTGGGAAAGCACAACAAGGGATGCCATTGCAAGAAATCAGGGTGTTTAAAAAAATACTGTGAGTGCTTCCAAGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAGGCTCTCTTCCATGGAGACCATGCCAACAGCATGGCATATATCCAGCAGGCTGCTAATGCTGCCATCACTGGAGCTATTGGATCCTCTGGCTTTGGATCTCCTCCAGTATCCAAGAAGAGAAAAGGTCAGGAACTGTTTTATGGGCCGACATCCAAGGATCCGTCTCTTCACAGGCTTGCACAATTCCAACAGGCAAGCCTTACCAAAGCATCTGTAACCACCTCTTCATTGTCTTCCACCCCTGTTTCTCGTGTCCCTAACAGTGCAGCATCAGGCACCTCAAAATTTACTTACAGGTCTCTCTTAGCAGACATCATTCAACCGCAGGACTTGAAGGAGCTTTGCTCTGTTCTGGTGGTAGTGTCTGAAGAAGCTGCCAGGACATTTGCAGACAAAAGAAATCTGGTGGAAAAGCCTGCAGAAGAACAGGTAGAAACTTCTCGTGCTTCATCGACTCAAGACAGGTTACAAAGCCAGAAGGAATCTGACATTGAGAAAGCAGTGGCTGATGATTGCTCAAGTAGAAACCAGGCTGATAAACTTGGGCCTGATGATTCCAGCTCAGATGGTGGGGATGTGCCAAAAGGGAGGCCAATGTCTCCTGGAACCCTAGCATTGATGTGTGATGAACAAGATACAATGTTCATGGCAGCTGCCTCCCCTAATGTGTTAATGGGCCATAGCTGCAACACATCTTCACAATTGCCTTATGGGCAAGGTATAACAGAGGCCTATGCGGAGCAGGAAAGGATTATCTTGACTAAGTTTCGAGATTGTCTCAACAGGCTCATAACTTTTGGAGAAATTAAAGAAACAAAGTGCTCCTCGCTAGCCAGAACTGAATCAGGAGGTCAAAATGAGCCATTCAGCAATGGCCCTGCAAATGCCAGAACCGATACTGGCAATCAACAGGTGCCTGTTAGCAATGGTGTTTCAAAACCTCCCTTTCCTCCAGCAACCAAGATGTCTCAGACGGTCACTGCAGCCGCCGCTTCTCCCAATAATACCCTGCTTTCAAAACCTTCAACCCACACTGAAAATGGGGATATAAATCTAAAGACCGAAAAAGAGTTGTAA | 1575 | 45.97 | MPVPPQTTHPSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGEALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANSMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTKASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTFADKRNLVEKPAEEQVETSRASSTQDRLQSQKESDIEKAVADDCSSRNQADKLGPDDSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMAAASPNVLMGHSCNTSSQLPYGQGITEAYAEQERIILTKFRDCLNRLITFGEIKETKCSSLARTESGGQNEPFSNGPANARTDTGNQQVPVSNGVSKPPFPPATKMSQTVTAAAASPNNTLLSKPSTHTENGDINLKTEKEL* | 525 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3008276 | 3017867 | + | Vvi11g318 | Vvi11g318 | 771759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 444 | 476 | - | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 197 | 218 | - | - | |
Vvi11g318 | 524 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 8 | 502 | - | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 484 | 514 | - | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 324 | 339 | - | - | |
Vvi11g318 | 524 | PANTHER | TESMIN/TSO1-RELATED | 8 | 502 | IPR028307 | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 444 | 524 | - | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 304 | 370 | - | - | |
Vvi11g318 | 524 | ProSiteProfiles | CRC domain profile. | 37 | 161 | IPR005172 | - | |
Vvi11g318 | 524 | MobiDBLite | consensus disorder prediction | 16 | 38 | - | - | |
Vvi11g318 | 524 | SMART | CXC_2 | 121 | 162 | IPR033467 | - | |
Vvi11g318 | 524 | SMART | CXC_2 | 36 | 76 | IPR033467 | - | |
Vvi11g318 | 524 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 124 | 158 | IPR005172 | - | |
Vvi11g318 | 524 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 38 | 73 | IPR005172 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13722 | PF03638 | TCR | 2.70E-12 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g318 | - | - | vvi:100249023 | 996.497 |