Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g318 ATGCCGGTGCCACCCCAGACGACTCATCCTTCAGTGAGGGTTGTGAAACCAGAATCCCCAAGATCGCGACCAAGACCCAATATTGATGTGAAAGATGGTACTCCAAAGAAGCAAAAACAATGCAACTGCAAACACTCTCGATGCTTGAAATTGTATTGTGAGTGTTTTGCATCTGGAATATATTGTGATGGGTGTAACTGTGTAAATTGTCACAATAATGTTGAAAATGAGGCTGCTAGGCGAGAAGCTGTTGAAGTTACCTTGGAGCGTAATCCAAATGCTTTCAGGCCAAAAATTGCTAGCAGTCCACATGGAGCTCGGGATAGCAGGGAGGAGTCTGGGGAAGCTTTAGTGTTGGGAAAGCACAACAAGGGATGCCATTGCAAGAAATCAGGGTGTTTAAAAAAATACTGTGAGTGCTTCCAAGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAGGCTCTCTTCCATGGAGACCATGCCAACAGCATGGCATATATCCAGCAGGCTGCTAATGCTGCCATCACTGGAGCTATTGGATCCTCTGGCTTTGGATCTCCTCCAGTATCCAAGAAGAGAAAAGGTCAGGAACTGTTTTATGGGCCGACATCCAAGGATCCGTCTCTTCACAGGCTTGCACAATTCCAACAGGCAAGCCTTACCAAAGCATCTGTAACCACCTCTTCATTGTCTTCCACCCCTGTTTCTCGTGTCCCTAACAGTGCAGCATCAGGCACCTCAAAATTTACTTACAGGTCTCTCTTAGCAGACATCATTCAACCGCAGGACTTGAAGGAGCTTTGCTCTGTTCTGGTGGTAGTGTCTGAAGAAGCTGCCAGGACATTTGCAGACAAAAGAAATCTGGTGGAAAAGCCTGCAGAAGAACAGGTAGAAACTTCTCGTGCTTCATCGACTCAAGACAGGTTACAAAGCCAGAAGGAATCTGACATTGAGAAAGCAGTGGCTGATGATTGCTCAAGTAGAAACCAGGCTGATAAACTTGGGCCTGATGATTCCAGCTCAGATGGTGGGGATGTGCCAAAAGGGAGGCCAATGTCTCCTGGAACCCTAGCATTGATGTGTGATGAACAAGATACAATGTTCATGGCAGCTGCCTCCCCTAATGTGTTAATGGGCCATAGCTGCAACACATCTTCACAATTGCCTTATGGGCAAGGTATAACAGAGGCCTATGCGGAGCAGGAAAGGATTATCTTGACTAAGTTTCGAGATTGTCTCAACAGGCTCATAACTTTTGGAGAAATTAAAGAAACAAAGTGCTCCTCGCTAGCCAGAACTGAATCAGGAGGTCAAAATGAGCCATTCAGCAATGGCCCTGCAAATGCCAGAACCGATACTGGCAATCAACAGGTGCCTGTTAGCAATGGTGTTTCAAAACCTCCCTTTCCTCCAGCAACCAAGATGTCTCAGACGGTCACTGCAGCCGCCGCTTCTCCCAATAATACCCTGCTTTCAAAACCTTCAACCCACACTGAAAATGGGGATATAAATCTAAAGACCGAAAAAGAGTTGTAA 1575 45.97 MPVPPQTTHPSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGEALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANSMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTKASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTFADKRNLVEKPAEEQVETSRASSTQDRLQSQKESDIEKAVADDCSSRNQADKLGPDDSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMAAASPNVLMGHSCNTSSQLPYGQGITEAYAEQERIILTKFRDCLNRLITFGEIKETKCSSLARTESGGQNEPFSNGPANARTDTGNQQVPVSNGVSKPPFPPATKMSQTVTAAAASPNNTLLSKPSTHTENGDINLKTEKEL* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3008276 3017867 + Vvi11g318 Vvi11g318 771759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g318 524 MobiDBLite consensus disorder prediction 444 476 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 197 218 - -
Vvi11g318 524 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 8 502 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 484 514 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 1 38 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 324 339 - -
Vvi11g318 524 PANTHER TESMIN/TSO1-RELATED 8 502 IPR028307 -
Vvi11g318 524 MobiDBLite consensus disorder prediction 444 524 - -
Vvi11g318 524 MobiDBLite consensus disorder prediction 304 370 - -
Vvi11g318 524 ProSiteProfiles CRC domain profile. 37 161 IPR005172 -
Vvi11g318 524 MobiDBLite consensus disorder prediction 16 38 - -
Vvi11g318 524 SMART CXC_2 121 162 IPR033467 -
Vvi11g318 524 SMART CXC_2 36 76 IPR033467 -
Vvi11g318 524 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 124 158 IPR005172 -
Vvi11g318 524 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 38 73 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g318 - - - vvi:100249023 996.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g451 Vvi11g318 ECH
Vvi4g315 Vvi11g318 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi11g318 ECH 1 441 CPP Transcription Factor Family AT2G20110 58.7 4.6e-139 491.9
Vvi4g315 ECH 171 581 CPP Transcription Factor Family AT2G20110 53.9 2.6e-110 396.4
Vvi11g318 ECH 2 515 CPP Transcription Factor Family AT4G29000 57.5 3.5e-156 548.9
Vvi4g315 ECH 149 587 CPP Transcription Factor Family AT4G29000 53.0 7.9e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13722 PF03638 TCR 2.70E-12 No_clan Vvi TF