Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g338 ATGTCGTCACCGTCGCCGGGGCAGTCCCCTGGTCCGACTTCGCCCCCCTCTACAAACACTACCTCGCCTCCGCCCCCCTCTACAAACACCACCGCGCCTCCTCCGGCCACTCCTGCTGCGCCTCCGCCATCTTCGCCGTCGCCTCCACCGCCCACTGCACCGACGGGATCGCCGCCTACAGCCCCGGCTGGTTCTCCTCCGCCTCCTCCGGACTCTCCTGGCTCTCCACCACCTTCGGGCCAAACCGGTTCACCACCGCCACCTTCTAGGGCTTCTCCGCCACCACCACCATCTTCACCATCTTCGAACAAGAGCCCACCGCCACCTCCGTCCGACTCAAAATCACCTCCGCCGCCGCCTTCGTCTCCATCCTCAAACACTGTATCTACAGGTCTTGTAGTTGGAATCGCCATAGGTGGAGTTGTTATTCTCGTGGTGCTGAGTCTTCTCTTCATATGTTGCAAGAAGAAGAAGAGGAGAGATCACAGACAGGACTACTATGTGCCGCCGCCGCCGGGCCCGAAAAATGATCCGTATGGTGGTCCACCACAGCAGTGGCAACACAATGTCCCTCCACCTGCAGATCATGCTGTCACAGTGTTTCCAAAGCCCTCTCCTCCACCAGGAACTGCATCACGCCCGCCCCACTCACCGGTGCAGGTTCCTACACCTCCGCCACCTCCACAACCACCTTTTGTGAGCAGCAGTGGTGGTTCAGGGTCCAATTATTCAGGATCTGACAACCCTCTCCCCCCACCTTCCCCTAGCATTGCTTTAGGTTTCTCAAAGAGCACATTCACGTATGAAGAATTGGTGATGGCAACAGATGGCTTCTCAAATGCCAACCTTCTTGGACAAGGTGGTTTTGGGTATGTGCACAGAGGTGTCCTTCCCAATGGGAAAGAAGTTGCAGTTAAGCAGCTCAAAGCTGGAAGTGGGCAGGGGGAGCGTGAATTTCAGGCAGAGGTTGAGATCATTAGTCGAGTACATCACAAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGGAAAAGGACGACCTACTATGGATTGGTCCACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGACTCGCATACTTGCACGAGGATTGTCACCCTAAGATCATTCATCGCGATATCAAGGCAGCTAATATACTTTTGGATTTCAAGTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCTAAGTTTTCTTCTGATGCCAATACTCATGTCTCGACTCGGGTAATGGGAACTTTTGGGTACTTGGCTCCAGAATATGCTGCAAGTGGGAAACTTTCAGACAAGTCAGATGTTTTCTCCTTTGGAGTCATGCTTCTTGAGTTGCTTACTGGTCGCAGACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCATGGTTGCTTGTGCTGCTGCTTGTGTGCGTCATTCAGCCCGGCGTCGACCAAGAATGAGCCAGATTGTCCGGGCATTGGAAGGAGATGCATCTCTATCTGATCTTAATGAAGGAATGAGACCTGGGCAAAGCTCAATCTACAGTTCCCATGGAAGTTCAGACTATGACACCAACCAGTACAATGAGGACATGATAAAATTCAGAAAGATGGCGTTGGCAAGCAGGGACTATGGCAGCAGTGAGTACAGTGGACCTACAAGTGAATATGGTTTGTATCCATCTGGCTCAAGTAGCGAAGGCCAACGAACCACCCGAGAGATGGAGATGGGAAAGATGAAGAAAGACAGTCGAGGCTACAGTGGAGGCTCTGAAAAATAA 1953 51.2 MSSPSPGQSPGPTSPPSTNTTSPPPPSTNTTAPPPATPAAPPPSSPSPPPPTAPTGSPPTAPAGSPPPPPDSPGSPPPSGQTGSPPPPSRASPPPPPSSPSSNKSPPPPPSDSKSPPPPPSSPSSNTVSTGLVVGIAIGGVVILVVLSLLFICCKKKKRRDHRQDYYVPPPPGPKNDPYGGPPQQWQHNVPPPADHAVTVFPKPSPPPGTASRPPHSPVQVPTPPPPPQPPFVSSSGGSGSNYSGSDNPLPPPSPSIALGFSKSTFTYEELVMATDGFSNANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVTLAGYCITGSHRLLVYEFVPNNTLEFHLHGKGRPTMDWSTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDANTHVSTRVMGTFGYLAPEYAASGKLSDKSDVFSFGVMLLELLTGRRPVDANQTFMEDSLVDWARPLLTRALEDGNFDTLVDPRLQKDYNHHEMARMVACAAACVRHSARRRPRMSQIVRALEGDASLSDLNEGMRPGQSSIYSSHGSSDYDTNQYNEDMIKFRKMALASRDYGSSEYSGPTSEYGLYPSGSSSEGQRTTREMEMGKMKKDSRGYSGGSEK* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3163806 3169618 - Vvi11g338 Vvi11g338 771779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g338 650 MobiDBLite consensus disorder prediction 562 580 - -
Vvi11g338 650 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 33 633 - -
Vvi11g338 650 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 33 633 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 629 650 - -
Vvi11g338 650 CDD STKc_IRAK 284 553 - -
Vvi11g338 650 Gene3D Transferase(Phosphotransferase) domain 1 354 563 - -
Vvi11g338 650 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Vvi11g338 650 SMART serkin_6 278 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g338 650 MobiDBLite consensus disorder prediction 1 128 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 167 189 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 197 233 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 604 628 - -
Vvi11g338 650 ProSiteProfiles Protein kinase domain profile. 278 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g338 650 SUPERFAMILY Protein kinase-like (PK-like) 251 551 IPR011009 -
Vvi11g338 650 Gene3D Phosphorylase Kinase; domain 1 256 353 - -
Vvi11g338 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Vvi11g338 650 MobiDBLite consensus disorder prediction 1 124 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 558 580 - -
Vvi11g338 650 MobiDBLite consensus disorder prediction 602 650 - -
Vvi11g338 650 Pfam Protein tyrosine and serine/threonine kinase 282 551 IPR001245 GO:0004672|GO:0006468
Vvi11g338 650 MobiDBLite consensus disorder prediction 158 256 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76047 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g338 - - vvi:100247489 942.569