Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g338 | ATGTCGTCACCGTCGCCGGGGCAGTCCCCTGGTCCGACTTCGCCCCCCTCTACAAACACTACCTCGCCTCCGCCCCCCTCTACAAACACCACCGCGCCTCCTCCGGCCACTCCTGCTGCGCCTCCGCCATCTTCGCCGTCGCCTCCACCGCCCACTGCACCGACGGGATCGCCGCCTACAGCCCCGGCTGGTTCTCCTCCGCCTCCTCCGGACTCTCCTGGCTCTCCACCACCTTCGGGCCAAACCGGTTCACCACCGCCACCTTCTAGGGCTTCTCCGCCACCACCACCATCTTCACCATCTTCGAACAAGAGCCCACCGCCACCTCCGTCCGACTCAAAATCACCTCCGCCGCCGCCTTCGTCTCCATCCTCAAACACTGTATCTACAGGTCTTGTAGTTGGAATCGCCATAGGTGGAGTTGTTATTCTCGTGGTGCTGAGTCTTCTCTTCATATGTTGCAAGAAGAAGAAGAGGAGAGATCACAGACAGGACTACTATGTGCCGCCGCCGCCGGGCCCGAAAAATGATCCGTATGGTGGTCCACCACAGCAGTGGCAACACAATGTCCCTCCACCTGCAGATCATGCTGTCACAGTGTTTCCAAAGCCCTCTCCTCCACCAGGAACTGCATCACGCCCGCCCCACTCACCGGTGCAGGTTCCTACACCTCCGCCACCTCCACAACCACCTTTTGTGAGCAGCAGTGGTGGTTCAGGGTCCAATTATTCAGGATCTGACAACCCTCTCCCCCCACCTTCCCCTAGCATTGCTTTAGGTTTCTCAAAGAGCACATTCACGTATGAAGAATTGGTGATGGCAACAGATGGCTTCTCAAATGCCAACCTTCTTGGACAAGGTGGTTTTGGGTATGTGCACAGAGGTGTCCTTCCCAATGGGAAAGAAGTTGCAGTTAAGCAGCTCAAAGCTGGAAGTGGGCAGGGGGAGCGTGAATTTCAGGCAGAGGTTGAGATCATTAGTCGAGTACATCACAAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGGAAAAGGACGACCTACTATGGATTGGTCCACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGACTCGCATACTTGCACGAGGATTGTCACCCTAAGATCATTCATCGCGATATCAAGGCAGCTAATATACTTTTGGATTTCAAGTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCTAAGTTTTCTTCTGATGCCAATACTCATGTCTCGACTCGGGTAATGGGAACTTTTGGGTACTTGGCTCCAGAATATGCTGCAAGTGGGAAACTTTCAGACAAGTCAGATGTTTTCTCCTTTGGAGTCATGCTTCTTGAGTTGCTTACTGGTCGCAGACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCATGGTTGCTTGTGCTGCTGCTTGTGTGCGTCATTCAGCCCGGCGTCGACCAAGAATGAGCCAGATTGTCCGGGCATTGGAAGGAGATGCATCTCTATCTGATCTTAATGAAGGAATGAGACCTGGGCAAAGCTCAATCTACAGTTCCCATGGAAGTTCAGACTATGACACCAACCAGTACAATGAGGACATGATAAAATTCAGAAAGATGGCGTTGGCAAGCAGGGACTATGGCAGCAGTGAGTACAGTGGACCTACAAGTGAATATGGTTTGTATCCATCTGGCTCAAGTAGCGAAGGCCAACGAACCACCCGAGAGATGGAGATGGGAAAGATGAAGAAAGACAGTCGAGGCTACAGTGGAGGCTCTGAAAAATAA | 1953 | 51.2 | MSSPSPGQSPGPTSPPSTNTTSPPPPSTNTTAPPPATPAAPPPSSPSPPPPTAPTGSPPTAPAGSPPPPPDSPGSPPPSGQTGSPPPPSRASPPPPPSSPSSNKSPPPPPSDSKSPPPPPSSPSSNTVSTGLVVGIAIGGVVILVVLSLLFICCKKKKRRDHRQDYYVPPPPGPKNDPYGGPPQQWQHNVPPPADHAVTVFPKPSPPPGTASRPPHSPVQVPTPPPPPQPPFVSSSGGSGSNYSGSDNPLPPPSPSIALGFSKSTFTYEELVMATDGFSNANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVTLAGYCITGSHRLLVYEFVPNNTLEFHLHGKGRPTMDWSTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDANTHVSTRVMGTFGYLAPEYAASGKLSDKSDVFSFGVMLLELLTGRRPVDANQTFMEDSLVDWARPLLTRALEDGNFDTLVDPRLQKDYNHHEMARMVACAAACVRHSARRRPRMSQIVRALEGDASLSDLNEGMRPGQSSIYSSHGSSDYDTNQYNEDMIKFRKMALASRDYGSSEYSGPTSEYGLYPSGSSSEGQRTTREMEMGKMKKDSRGYSGGSEK* | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3163806 | 3169618 | - | Vvi11g338 | Vvi11g338 | 771779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 562 | 580 | - | - | |
Vvi11g338 | 650 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 33 | 633 | - | - | |
Vvi11g338 | 650 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 33 | 633 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 629 | 650 | - | - | |
Vvi11g338 | 650 | CDD | STKc_IRAK | 284 | 553 | - | - | |
Vvi11g338 | 650 | Gene3D | Transferase(Phosphotransferase) domain 1 | 354 | 563 | - | - | |
Vvi11g338 | 650 | ProSitePatterns | Protein kinases ATP-binding region signature. | 284 | 306 | IPR017441 | GO:0005524 | |
Vvi11g338 | 650 | SMART | serkin_6 | 278 | 514 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 1 | 128 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 167 | 189 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 197 | 233 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 604 | 628 | - | - | |
Vvi11g338 | 650 | ProSiteProfiles | Protein kinase domain profile. | 278 | 557 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g338 | 650 | SUPERFAMILY | Protein kinase-like (PK-like) | 251 | 551 | IPR011009 | - | |
Vvi11g338 | 650 | Gene3D | Phosphorylase Kinase; domain 1 | 256 | 353 | - | - | |
Vvi11g338 | 650 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 398 | 410 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 1 | 124 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 558 | 580 | - | - | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 602 | 650 | - | - | |
Vvi11g338 | 650 | Pfam | Protein tyrosine and serine/threonine kinase | 282 | 551 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g338 | 650 | MobiDBLite | consensus disorder prediction | 158 | 256 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76047 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-46 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g338 | - | - | vvi:100247489 | 942.569 |