Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g384 ATGTCCATGAAGTCAGCGCAGTCGTCTTACCGCGATCGAACGCAAGAGTTTCTGAACGTTGCCGAGAGGCTCAAGAAGTCATTCTCTTCGGCTGCGCCGAATGCGGTGACCAGTAGTGGCGCGAAGCCCGACGGAACGCGATCTTCGCTCGCTATTCAGAAGGAATTCAAAGACAGGGCTTCGCGGATTGGATATGGGATTCATCAGACCTCGCAGAAGCTCGCCAAGCTAGCGAAATTGGCAAAGAGGACATCAGTTTTTGATGATCCAACAATGGAGATCCAAGAATTGACAGCTGTTGTCAAGCAGGATATTACTGCACTAAATGCAGCTGTAGTGGACCTACAACTCCTTTGTAACTCCCAAAATGAAAGTGGCAACATCTCAAGCGACACAACCTCCCATTCAACAACAGTTGTAGATGACTTAAAAAATCGCTTGATGAGCGCGACAAAGGAGTTCAAAGATGTTCTCACCATGCGAACAGAGAATTTAAAGGTTCATGAGAACAGAAGGCAGTTGTTTTCTTCAACTGCTTCAAAAGAGTCCACAAATCCTTTTGTTCGCCAGCGTCCATTGGCTGCAAAATCAACTGCTACTGCATCATCATCCCCTCCTCCTTGGGCCAATGAATCTTCATCCTCATCTCCCCTCTTTCCAAGGAAACAGGGAAATGTGGAATCTCAACCATTGCTGCAGCAGCAGCAGCAACAACAACAGTTGGTTCCTCTGCAAGACAGTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTGGAGTCAACCATTCATGAGCTTAGCAACATCTTCACACAACTGGCTACTATGGTTTCACAGCAAGGAGAGCTTGCAATCAGGATTGATGAGAACATGGAGGATACACTGGCAAACGTGGAAGGAGCACAGGGACAACTGGTCCGGTACCTTAACAGCATATCATCCAATCGATGGTTGATGATCAAGATATTCTTTGTATTGATTGTATTTCTTATGATTTTCTTATTTTTTGTGGCATAA 1017 45.72 MSMKSAQSSYRDRTQEFLNVAERLKKSFSSAAPNAVTSSGAKPDGTRSSLAIQKEFKDRASRIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVVKQDITALNAAVVDLQLLCNSQNESGNISSDTTSHSTTVVDDLKNRLMSATKEFKDVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLAAKSTATASSSPPPWANESSSSSPLFPRKQGNVESQPLLQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMEDTLANVEGAQGQLVRYLNSISSNRWLMIKIFFVLIVFLMIFLFFVA* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3667386 3671975 + Vvi11g384 Vvi11g384 771825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g384 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Vvi11g384 338 SMART tSNARE_6 241 308 IPR000727 -
Vvi11g384 338 MobiDBLite consensus disorder prediction 171 233 - -
Vvi11g384 338 Pfam SNARE domain 283 334 IPR000727 -
Vvi11g384 338 PANTHER SYNTAXIN 3 337 IPR045242 -
Vvi11g384 338 MobiDBLite consensus disorder prediction 169 233 - -
Vvi11g384 338 SUPERFAMILY t-snare proteins 54 301 IPR010989 GO:0016020|GO:0016192
Vvi11g384 338 Gene3D - 51 301 - -
Vvi11g384 338 MobiDBLite consensus disorder prediction 30 46 - -
Vvi11g384 338 CDD SNARE_syntaxin5 249 333 - -
Vvi11g384 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi11g384 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Vvi11g384 338 PANTHER SYNTAXIN-32-LIKE 3 337 - -
Vvi11g384 338 MobiDBLite consensus disorder prediction 28 48 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g377 Vvi11g384 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g384 K08490 - vvi:100250972 563.148