Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g384 | ATGTCCATGAAGTCAGCGCAGTCGTCTTACCGCGATCGAACGCAAGAGTTTCTGAACGTTGCCGAGAGGCTCAAGAAGTCATTCTCTTCGGCTGCGCCGAATGCGGTGACCAGTAGTGGCGCGAAGCCCGACGGAACGCGATCTTCGCTCGCTATTCAGAAGGAATTCAAAGACAGGGCTTCGCGGATTGGATATGGGATTCATCAGACCTCGCAGAAGCTCGCCAAGCTAGCGAAATTGGCAAAGAGGACATCAGTTTTTGATGATCCAACAATGGAGATCCAAGAATTGACAGCTGTTGTCAAGCAGGATATTACTGCACTAAATGCAGCTGTAGTGGACCTACAACTCCTTTGTAACTCCCAAAATGAAAGTGGCAACATCTCAAGCGACACAACCTCCCATTCAACAACAGTTGTAGATGACTTAAAAAATCGCTTGATGAGCGCGACAAAGGAGTTCAAAGATGTTCTCACCATGCGAACAGAGAATTTAAAGGTTCATGAGAACAGAAGGCAGTTGTTTTCTTCAACTGCTTCAAAAGAGTCCACAAATCCTTTTGTTCGCCAGCGTCCATTGGCTGCAAAATCAACTGCTACTGCATCATCATCCCCTCCTCCTTGGGCCAATGAATCTTCATCCTCATCTCCCCTCTTTCCAAGGAAACAGGGAAATGTGGAATCTCAACCATTGCTGCAGCAGCAGCAGCAACAACAACAGTTGGTTCCTCTGCAAGACAGTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTGGAGTCAACCATTCATGAGCTTAGCAACATCTTCACACAACTGGCTACTATGGTTTCACAGCAAGGAGAGCTTGCAATCAGGATTGATGAGAACATGGAGGATACACTGGCAAACGTGGAAGGAGCACAGGGACAACTGGTCCGGTACCTTAACAGCATATCATCCAATCGATGGTTGATGATCAAGATATTCTTTGTATTGATTGTATTTCTTATGATTTTCTTATTTTTTGTGGCATAA | 1017 | 45.72 | MSMKSAQSSYRDRTQEFLNVAERLKKSFSSAAPNAVTSSGAKPDGTRSSLAIQKEFKDRASRIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVVKQDITALNAAVVDLQLLCNSQNESGNISSDTTSHSTTVVDDLKNRLMSATKEFKDVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLAAKSTATASSSPPPWANESSSSSPLFPRKQGNVESQPLLQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMEDTLANVEGAQGQLVRYLNSISSNRWLMIKIFFVLIVFLMIFLFFVA* | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3667386 | 3671975 | + | Vvi11g384 | Vvi11g384 | 771825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g384 | 338 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 308 | IPR000727 | - | |
Vvi11g384 | 338 | SMART | tSNARE_6 | 241 | 308 | IPR000727 | - | |
Vvi11g384 | 338 | MobiDBLite | consensus disorder prediction | 171 | 233 | - | - | |
Vvi11g384 | 338 | Pfam | SNARE domain | 283 | 334 | IPR000727 | - | |
Vvi11g384 | 338 | PANTHER | SYNTAXIN | 3 | 337 | IPR045242 | - | |
Vvi11g384 | 338 | MobiDBLite | consensus disorder prediction | 169 | 233 | - | - | |
Vvi11g384 | 338 | SUPERFAMILY | t-snare proteins | 54 | 301 | IPR010989 | GO:0016020|GO:0016192 | |
Vvi11g384 | 338 | Gene3D | - | 51 | 301 | - | - | |
Vvi11g384 | 338 | MobiDBLite | consensus disorder prediction | 30 | 46 | - | - | |
Vvi11g384 | 338 | CDD | SNARE_syntaxin5 | 249 | 333 | - | - | |
Vvi11g384 | 338 | ProSitePatterns | Syntaxin / epimorphin family signature. | 252 | 291 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Vvi11g384 | 338 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 8 | 26 | IPR021538 | - | |
Vvi11g384 | 338 | PANTHER | SYNTAXIN-32-LIKE | 3 | 337 | - | - | |
Vvi11g384 | 338 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g384 | K08490 | - | vvi:100250972 | 563.148 |