Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g392 ATGGAACGGCCAGAAAACTATGAGAATCATGAGCACATTGTTGACATAGTCAGTGCTAGTGATGCTTCCTCATCAAGCTCATCTGATGAAGATTCTGCTCATGTTTCAAATCCAACCCACCATGAAAATAGACCATTAACTGACGCTTGGGTCCCCATATCTCAATCTTCCCCATCTTCCTCCGATGTATCAGAGTCTAGGAATTCTTCAATCATAACCAGAGCTCATGGGCCAGGGCGTCGTCGCTGGAGTCCGTTTAATTCAGGGTTATGGATTTCCATTGAGATAGTTTTCACTACAAGCCTGATTGTTGCATCCATAGTAGTATTGTCCTTGTCAAGAGATGAGAAACCACAAACTCCGTTGTTTGCTTGGGTTGTGGGTTATGCAGCTGGATGTGCAGCAAGCCTTCCTATTCTTTTCTGGCGTTATCTTCGCCGCAACCATGATGGTGAGCAAGGTTTAAATCATATGCTTCAGGGTTCATCACAAGGAAGTACTACATTGGAATCTAATTCGTACATAACTATCTCATTGACCCGGTCTGCAGCAGAGGAAAATCTCCCAGATGCGTCTACAAACACTTGGAATGGTCATACTATGGGTGCTTCAAATGCTAGGCTCAGTGTATTAGCAGACTACTATAAGATGGCCCTGGATTGCTTCTTTGCTGTGTGGTTTGTGGTTGGTAATGTATGGATTTTTGGAGGACACTCCTCTTTTACCGCAGCTCCAAATTTGTACAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATTGGATACGCTATGCCTTTCATTCTATGTGCAATGATATGCTGCTGCTTGCCTTGTATAATTTCAATTCTTGGCCATGGGGATCTGAGCCAAGTTAGAGGAGCCAGTGCAGAATCTATTAATGCTTTACCAACCTACAAATTCAAGTTGAAGAAAAATGGAAGTGGCAACAGTGGAGAAATTAGTTCTGGAGTTGAAGGTGGGGTTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGCTGCCTTGCTCTCATTTCTTCCATAGTGAGTGTGTGGATAAATGGCTGAAGATCAATGCATCCTGTCCCCTCTGCAAATGCGAGGTTGGTGAGAATACTGGGAGTTTGCCATCTTCATCAAACTCCTCCCAGCAACGATGA 1224 44.12 MERPENYENHEHIVDIVSASDASSSSSSDEDSAHVSNPTHHENRPLTDAWVPISQSSPSSSDVSESRNSSIITRAHGPGRRRWSPFNSGLWISIEIVFTTSLIVASIVVLSLSRDEKPQTPLFAWVVGYAAGCAASLPILFWRYLRRNHDGEQGLNHMLQGSSQGSTTLESNSYITISLTRSAAEENLPDASTNTWNGHTMGASNARLSVLADYYKMALDCFFAVWFVVGNVWIFGGHSSFTAAPNLYRLCIVFLTFSCIGYAMPFILCAMICCCLPCIISILGHGDLSQVRGASAESINALPTYKFKLKKNGSGNSGEISSGVEGGVVGAGTEKERAISGEDAVCCICLTRYADDDELRELPCSHFFHSECVDKWLKINASCPLCKCEVGENTGSLPSSSNSSQQR* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3757863 3762452 - Vvi11g392 Vvi11g392 771833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g392 407 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 403 - -
Vvi11g392 407 CDD RING-H2_RNF111_like 345 388 - -
Vvi11g392 407 Pfam Ring finger domain 346 387 IPR001841 -
Vvi11g392 407 SMART ringv_2 345 387 IPR011016 GO:0008270
Vvi11g392 407 SUPERFAMILY RING/U-box 339 398 - -
Vvi11g392 407 MobiDBLite consensus disorder prediction 1 15 - -
Vvi11g392 407 MobiDBLite consensus disorder prediction 18 73 - -
Vvi11g392 407 MobiDBLite consensus disorder prediction 1 80 - -
Vvi11g392 407 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 403 - -
Vvi11g392 407 SMART ring_2 346 386 IPR001841 -
Vvi11g392 407 ProSiteProfiles Zinc finger RING-type profile. 346 387 IPR001841 -
Vvi11g392 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 401 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g371 Vvi11g392 ECH
Vvi9g413 Vvi11g392 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g392 - - vvi:100264554 744.577