Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g40 ATGAAAGCTCCACCAAATGGGTTTCTGGCAGGTTCTGGTGAAGGAGAAAGGAAGAGTATTAATTCTGAGTTGTGGCATGCTTGTGCGGGGCCCCTGGTTTCATTGCCTCCAGTTGGAAGTCTCGTGGTGTACTTCCCTCAAGGTCACAGTGAGCAAGTTGCTGCATCGATGCAAAAGGAGACTGAATGCGTACCAAGTTATCCTAATCTTCCTTCCAAGTTGATTTGCATGCTTCATAATGTCACATTACATGCTGATGCAGAAACTGATGAAGTTTATGCGCAGATGACCCTTCAGCCTGTAAGCAAATATGACAAGGAGGCATTGCTGGCATCTGATCTTGGCCTCAAGCAAAGCAGGCAACCAGTTGAGTTTTTCTGTAAAACTCTCACAGCTAGTGACACAAGCACCCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAGATCTTTCCACCTCTTGATTTCTCGATGCAACCCCCTGCTCAGGAGATTGTGGCCAGAGATTTACATGATAATACATGGACATTCAGACATATTTATCGAGGGCAACCAAAAAGGCACCTGCTGACTACAGGTTGGAGTGTCTTTGTTAGCACAAAAAGATTGTTCGCTGGTGATTCTGTCCTTTTTATAAGAGATGAAAAATCACAGCTTCTCTTGGGTATAAGGCGTGCTAATAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCCTGTGATAGCATGCATATAGGAATTCTAGCTGCTGCTGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATTTTATAATCCAAGGGCTAGCCCTTCTGAGTTTGTGATTCCCTTAGCCAAATATAACAAAGCAATGTATACCCAAGTTTCACTTGGCATGCGATTTAGAATGATGTTTGAAACTGAGGAGTCAGGGGTACGCAGATACATGGGTACCATCACTGGCATCAGTGAACTTGATGCTGCGCGATGGAAAAATTCACAATGGCGCAACCTTCAGGTTGGCTGGGATGAATCAACAGCTGGCGAACGGCCAAGCCGAGTTTCAATTTGGGAAATTGAACCTGTTGTAACTCCTTTCTATTTATGTCCTCCTCCATTTTTCAGACCCAAATTTCCCAAACAACCAGGATTTCCAGATGATGAGTCTGATATAGAGAGTGCTTTCAAGAGAGGCATGCCCTGGCTTGGGGATGACTTTGGCATGAAGGATGCCCCGAGCTCAATCTTCCCAGGCTTGAATCTAGTCCAGTGGATGAGCATGCAACAGAATAATCAATTTCCAGCTTCTCAGTCAGGACTATTCCCTCCCATGGTTTCTTCAACTGTCCTGCACAGTAACCTTAGCACTGATGATCCGTCCAAATTGTTGAGTTTTCAAGCTCCTGCGTTGTCTGCACCAAGTCTCCAGTTCAATAAAGTAAATCAACAAAATCAACTATTCCAACCAGCTTTTGTAAATGGTGTATTCAGTCTGCTAGTAGGAATTCATTTCAGTTGTCATCTTTGCCACAAGACTTGCAGTTTCAGCAACAAATGGAACAGCAGCCTAGCCTTCTCGTCTCAGAGGCCACAACAGCCACAGCAACCACAAGTGCAACAATCCTCACAGCAGAACCTACCAGAGCATCAACTTCAGTTACAGTATCTGCAGAAATTGCAGCAGCAGCAGTTGCTTTCTCCGGTAAGCCCACGGTTACAGCCTCAGCAGCCACAGCAACAGCAGGCAAATCAACAAAACCAGTCATTACAACATTTGTCTCTGTCTCAGCAGCAGCTAAGTAGCAATAGTTTCTCAACATCAGCGCTCATGCAATCACAACAAATTCCCATGAACCAACTCCAGGGCCAGCACAAACCAATTACAGCAATCAGAGCTCATTCTGGGCTTACAGATGGGGATGCTCCATCATGTTCAACCTCACCTTCTACTAATAATTGCCAGGTCCCATCAAATTTCCTCAATAGAAACCAACAAGGGCCAGCCATATTATTGGGGGATTCAGTGGTTGAGCCTGCTAGTAATCTTTCAAATCCTCAGAGTAATCCTCCTTTTGCAGTTAATATTGATGGTTTGACACCTGACACTCTGTTAGATATTGAGACGGAGTTGTCTACTGCTGCGATTAGCTCTCAGTCATTTGGGGTTCCGAACATGTCTTTCAAGCCTGGGTGTTCAAATGATGTTGCCATCACAGAGACTGGGGTTTTGAGCAATGGGTTGTGGACAAACCAGGCTCAGCGTATGCGGACATATACAAAGGTTCAAAAGCGTGGTTCTGTGGGGAGATCTATCGATGTCACTCGTTACAAAGGTTATGATGAGCTCAGGCATGATCTTGCCCGCATGTTTGGAATTGAAGGGCAGCTAGAAGATCCACAAAGGACCGACTGGAAGCTTGTTTATGTTGATCATGAGAATGACATACTACTTGTTGGTGATGACCCTTGGGAAGAGTTTGTAAGCTGTGTTCAGAGTATAAAGATACTGTCATCTGCTGAAGTACAGCAGATGAGTTTGGATGGAGATCTGGGTCACGTGCCTGTCCCAAATCAAGCTTGTAGTGGGACTGATAGTGGGAATGCATGGAAGGGTCACTACGAGGATACCTCAGCTGCCTCATTTAATCGATGA 2637 45.09 MKAPPNGFLAGSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETECVPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPVSKYDKEALLASDLGLKQSRQPVEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISCDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDAARWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYLCPPPFFRPKFPKQPGFPDDESDIESAFKRGMPWLGDDFGMKDAPSSIFPGLNLVQWMSMQQNNQFPASQSGLFPPMVSSTVLHSNLSTDDPSKLLSFQAPALSAPSLQFNKVNQQNQLFQPAFVNGVFSLLVGIHFSCHLCHKTCSFSNKWNSSLAFSSQRPQQPQQPQVQQSSQQNLPEHQLQLQYLQKLQQQQLLSPVSPRLQPQQPQQQQANQQNQSLQHLSLSQQQLSSNSFSTSALMQSQQIPMNQLQGQHKPITAIRAHSGLTDGDAPSCSTSPSTNNCQVPSNFLNRNQQGPAILLGDSVVEPASNLSNPQSNPPFAVNIDGLTPDTLLDIETELSTAAISSQSFGVPNMSFKPGCSNDVAITETGVLSNGLWTNQAQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDSGNAWKGHYEDTSAASFNR* 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 629188 640325 + Vvi11g40 Vvi11g40 771481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g40 878 MobiDBLite consensus disorder prediction 521 541 - -
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 19 519 676 - -
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 19 1 483 - -
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 19 696 866 - -
Vvi11g40 878 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vvi11g40 878 Pfam AUX/IAA family 748 837 IPR033389 -
Vvi11g40 878 Gene3D - 289 360 - -
Vvi11g40 878 Gene3D - 746 840 - -
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 519 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 483 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g40 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 696 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g40 878 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi11g40 878 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vvi11g40 878 Gene3D - 123 227 IPR015300 -
Vvi11g40 878 SMART B3_2 126 228 IPR003340 GO:0003677
Vvi11g40 878 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vvi11g40 878 ProSiteProfiles PB1 domain profile. 751 844 IPR000270 GO:0005515
Vvi11g40 878 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vvi11g40 878 SUPERFAMILY CAD & PB1 domains 766 829 - -
Vvi11g40 878 MobiDBLite consensus disorder prediction 561 591 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13727 PF02309 AUX_IAA 1.20E-09 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g40 K14486 - vvi:100257618 951.814