Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g40 | ATGAAAGCTCCACCAAATGGGTTTCTGGCAGGTTCTGGTGAAGGAGAAAGGAAGAGTATTAATTCTGAGTTGTGGCATGCTTGTGCGGGGCCCCTGGTTTCATTGCCTCCAGTTGGAAGTCTCGTGGTGTACTTCCCTCAAGGTCACAGTGAGCAAGTTGCTGCATCGATGCAAAAGGAGACTGAATGCGTACCAAGTTATCCTAATCTTCCTTCCAAGTTGATTTGCATGCTTCATAATGTCACATTACATGCTGATGCAGAAACTGATGAAGTTTATGCGCAGATGACCCTTCAGCCTGTAAGCAAATATGACAAGGAGGCATTGCTGGCATCTGATCTTGGCCTCAAGCAAAGCAGGCAACCAGTTGAGTTTTTCTGTAAAACTCTCACAGCTAGTGACACAAGCACCCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAGATCTTTCCACCTCTTGATTTCTCGATGCAACCCCCTGCTCAGGAGATTGTGGCCAGAGATTTACATGATAATACATGGACATTCAGACATATTTATCGAGGGCAACCAAAAAGGCACCTGCTGACTACAGGTTGGAGTGTCTTTGTTAGCACAAAAAGATTGTTCGCTGGTGATTCTGTCCTTTTTATAAGAGATGAAAAATCACAGCTTCTCTTGGGTATAAGGCGTGCTAATAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCCTGTGATAGCATGCATATAGGAATTCTAGCTGCTGCTGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATTTTATAATCCAAGGGCTAGCCCTTCTGAGTTTGTGATTCCCTTAGCCAAATATAACAAAGCAATGTATACCCAAGTTTCACTTGGCATGCGATTTAGAATGATGTTTGAAACTGAGGAGTCAGGGGTACGCAGATACATGGGTACCATCACTGGCATCAGTGAACTTGATGCTGCGCGATGGAAAAATTCACAATGGCGCAACCTTCAGGTTGGCTGGGATGAATCAACAGCTGGCGAACGGCCAAGCCGAGTTTCAATTTGGGAAATTGAACCTGTTGTAACTCCTTTCTATTTATGTCCTCCTCCATTTTTCAGACCCAAATTTCCCAAACAACCAGGATTTCCAGATGATGAGTCTGATATAGAGAGTGCTTTCAAGAGAGGCATGCCCTGGCTTGGGGATGACTTTGGCATGAAGGATGCCCCGAGCTCAATCTTCCCAGGCTTGAATCTAGTCCAGTGGATGAGCATGCAACAGAATAATCAATTTCCAGCTTCTCAGTCAGGACTATTCCCTCCCATGGTTTCTTCAACTGTCCTGCACAGTAACCTTAGCACTGATGATCCGTCCAAATTGTTGAGTTTTCAAGCTCCTGCGTTGTCTGCACCAAGTCTCCAGTTCAATAAAGTAAATCAACAAAATCAACTATTCCAACCAGCTTTTGTAAATGGTGTATTCAGTCTGCTAGTAGGAATTCATTTCAGTTGTCATCTTTGCCACAAGACTTGCAGTTTCAGCAACAAATGGAACAGCAGCCTAGCCTTCTCGTCTCAGAGGCCACAACAGCCACAGCAACCACAAGTGCAACAATCCTCACAGCAGAACCTACCAGAGCATCAACTTCAGTTACAGTATCTGCAGAAATTGCAGCAGCAGCAGTTGCTTTCTCCGGTAAGCCCACGGTTACAGCCTCAGCAGCCACAGCAACAGCAGGCAAATCAACAAAACCAGTCATTACAACATTTGTCTCTGTCTCAGCAGCAGCTAAGTAGCAATAGTTTCTCAACATCAGCGCTCATGCAATCACAACAAATTCCCATGAACCAACTCCAGGGCCAGCACAAACCAATTACAGCAATCAGAGCTCATTCTGGGCTTACAGATGGGGATGCTCCATCATGTTCAACCTCACCTTCTACTAATAATTGCCAGGTCCCATCAAATTTCCTCAATAGAAACCAACAAGGGCCAGCCATATTATTGGGGGATTCAGTGGTTGAGCCTGCTAGTAATCTTTCAAATCCTCAGAGTAATCCTCCTTTTGCAGTTAATATTGATGGTTTGACACCTGACACTCTGTTAGATATTGAGACGGAGTTGTCTACTGCTGCGATTAGCTCTCAGTCATTTGGGGTTCCGAACATGTCTTTCAAGCCTGGGTGTTCAAATGATGTTGCCATCACAGAGACTGGGGTTTTGAGCAATGGGTTGTGGACAAACCAGGCTCAGCGTATGCGGACATATACAAAGGTTCAAAAGCGTGGTTCTGTGGGGAGATCTATCGATGTCACTCGTTACAAAGGTTATGATGAGCTCAGGCATGATCTTGCCCGCATGTTTGGAATTGAAGGGCAGCTAGAAGATCCACAAAGGACCGACTGGAAGCTTGTTTATGTTGATCATGAGAATGACATACTACTTGTTGGTGATGACCCTTGGGAAGAGTTTGTAAGCTGTGTTCAGAGTATAAAGATACTGTCATCTGCTGAAGTACAGCAGATGAGTTTGGATGGAGATCTGGGTCACGTGCCTGTCCCAAATCAAGCTTGTAGTGGGACTGATAGTGGGAATGCATGGAAGGGTCACTACGAGGATACCTCAGCTGCCTCATTTAATCGATGA | 2637 | 45.09 | MKAPPNGFLAGSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETECVPSYPNLPSKLICMLHNVTLHADAETDEVYAQMTLQPVSKYDKEALLASDLGLKQSRQPVEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISCDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISELDAARWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYLCPPPFFRPKFPKQPGFPDDESDIESAFKRGMPWLGDDFGMKDAPSSIFPGLNLVQWMSMQQNNQFPASQSGLFPPMVSSTVLHSNLSTDDPSKLLSFQAPALSAPSLQFNKVNQQNQLFQPAFVNGVFSLLVGIHFSCHLCHKTCSFSNKWNSSLAFSSQRPQQPQQPQVQQSSQQNLPEHQLQLQYLQKLQQQQLLSPVSPRLQPQQPQQQQANQQNQSLQHLSLSQQQLSSNSFSTSALMQSQQIPMNQLQGQHKPITAIRAHSGLTDGDAPSCSTSPSTNNCQVPSNFLNRNQQGPAILLGDSVVEPASNLSNPQSNPPFAVNIDGLTPDTLLDIETELSTAAISSQSFGVPNMSFKPGCSNDVAITETGVLSNGLWTNQAQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDSGNAWKGHYEDTSAASFNR* | 879 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 629188 | 640325 | + | Vvi11g40 | Vvi11g40 | 771481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g40 | 878 | MobiDBLite | consensus disorder prediction | 521 | 541 | - | - | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 19 | 519 | 676 | - | - | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 19 | 1 | 483 | - | - | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 19 | 696 | 866 | - | - | |
Vvi11g40 | 878 | CDD | B3_DNA | 125 | 226 | IPR003340 | GO:0003677 | |
Vvi11g40 | 878 | Pfam | AUX/IAA family | 748 | 837 | IPR033389 | - | |
Vvi11g40 | 878 | Gene3D | - | 289 | 360 | - | - | |
Vvi11g40 | 878 | Gene3D | - | 746 | 840 | - | - | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 519 | 676 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 483 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g40 | 878 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 696 | 866 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g40 | 878 | Pfam | Auxin response factor | 252 | 334 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Vvi11g40 | 878 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 255 | IPR015300 | - | |
Vvi11g40 | 878 | Gene3D | - | 123 | 227 | IPR015300 | - | |
Vvi11g40 | 878 | SMART | B3_2 | 126 | 228 | IPR003340 | GO:0003677 | |
Vvi11g40 | 878 | Pfam | B3 DNA binding domain | 126 | 227 | IPR003340 | GO:0003677 | |
Vvi11g40 | 878 | ProSiteProfiles | PB1 domain profile. | 751 | 844 | IPR000270 | GO:0005515 | |
Vvi11g40 | 878 | ProSiteProfiles | B3 DNA-binding domain profile. | 126 | 228 | IPR003340 | GO:0003677 | |
Vvi11g40 | 878 | SUPERFAMILY | CAD & PB1 domains | 766 | 829 | - | - | |
Vvi11g40 | 878 | MobiDBLite | consensus disorder prediction | 561 | 591 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13727 | PF02309 | AUX_IAA | 1.20E-09 | CL0072 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g40 | K14486 | - | vvi:100257618 | 951.814 |