Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g404 ATGGCAGTGGGTTCTGACGCTGGGTTTGTTTTTCTTACTGTGTTGTTGGCTTGGGTGGTGTTACTGAGTGGACGAGTGAGTAGCGAGCCGACTCAGGACAAGCAAACCCTCCTTGCTTTTCTCTCTCAGATTCCTCATGAGAATCGCATCCAATGGAACGCTTCAGACTCCGCCTGCAATTGGGTCGGGGTGGGGTGTGATGCTAATCGCTCTAATGTCTACACTCTTCGTCTTCCAGGCGTGGGGCTTGTGGGTCAGATCCCAGAGAATACTATCGGCCGTTTAAGTCAACTTCGGGTGCTCAGTCTTAGGTCGAATCGTCTCTCCGGTGATATCCCCCGAGATTTTGCAAACTTGACGTTGTTGCGCAGCCTTTACCTTCAGGATAATCTTTTTTCCGGCGGATTTCCGGGGAGTATTACTCAGTTAACTCGGTTGGGTCGGTTGGATCTTTCGTCCAACAACTTCACCGGAGAGCTTCCATTTTCCATCAACAATTTGAACCAATTGACTGGACTGTTCTTGCAGAACAATGGCTTTTCTGGCAGTATACCCAGCATAAACTCTGATGGATTGGATGATTTCAATGTTTCCAACAACAGGCTCAATGGTTCAATCCCCCAGACATTATTCAAGTTCGGGTCTTCTTCATTCGCCGGAAACCTAGCTCTCTGCGGCGGACCGTTGCCGCCATGCAACCCATTTTTCCCCTCTCCAACACCATCTCCCTCAATTGTTCCATCTAACCCAGTTCAGAAAAAGTCGAAAAAGCTCTCGACAGCAGCTATAATCGCAATCTCAGTTGGGTCCGCTCTAATTCTCTGTCTCCTCTTACTCTTCCTCCTCCTCTGCCTGCGCAGGCGCCAGCGCCGGCAGCCCCCGAAGCCACCAAAGCCCGAAACAACCCGATCCATAGTGGCTGAGACCGCCACCTCCTCTTCCAAGGACGACATCACCGGCGGGTCAGCTGAAGCAGACAGAAACAAGTTGGTTTTCTTCGAGGGCGGCGTCTACAGCTTTGATTTGGAAGATTTGCTGAGGGCTTCAGCAGAGGTGTTGGGCAAAGGAAGCGTAGGGACTTCGTACAAGGCAGTGTTGGAGGAAGGTACTACGGTGGTTGTGAAGAGATTGAAAGATGTTACAGTCACTAAGAAGGAGTTCGAAATGCAAATTGACGTTCTAGGGAAGATTAAGCACGAAAATGTGGTTCCTCTCAGAGCTTTTTACTTCTCCAAGGATGAGAAATTGCTAGTCTACGACTTCATGGCTGCCGGCAGTTTGTCTGCCCTTCTGCACGGCAGTAGAGGATCGGGCCGTACGCCACTTGACTGGGACAACCGGATGAGAATAGCGCTCAGCGCCGCAAGGGGGATAGCCCACCTACACGTGTCGGGAAAGGTGGTCCATGGCAACATCAAGTCCTCCAACATCCTGCTCCGCCCGGACCACGATGCTTGCGTTTCCGATTTCGGGCTCAACCCGCTCTTTGGAAACTCCACGCCGCCCAATCGGGTCGCGGGATATCGGGCGCCCGAGGTGATGGAAACCCGAAAGGTCACGTTCAAGTCGGACGTATACAGTTTCGGCGTGTTGCTGTTGGAGCTATTGACGGGGAAGGCACCAAATCAAGCGTCGTTGGGGGAGGAGGGGATTGATCTTCCAAGGTGGGTCCAGTCGGTGGTCCGTGAGGAATGGACTGCTGAGGTATTCGACGTGGAGTTGATGCGATACCACAACATCGAGGAGGAGATGGTGCAGCTGCTGCAAATCGCGATGGCCTGCGTCTCCACCGTACCAGATCAGAGACCCGCCATGCAGGAGGTGGTCCGAATGATTGAGGATATGAACAGGGGCGAGACGGACGACGGCTTACGACAATCGTCCGATGACCCATCCAAGGGATCGGGCGGTCACACGCCTCCGCCGGAGTCACGGACCCCACCTGCGGCGGTCACACCTTAG 1962 53.26 MAVGSDAGFVFLTVLLAWVVLLSGRVSSEPTQDKQTLLAFLSQIPHENRIQWNASDSACNWVGVGCDANRSNVYTLRLPGVGLVGQIPENTIGRLSQLRVLSLRSNRLSGDIPRDFANLTLLRSLYLQDNLFSGGFPGSITQLTRLGRLDLSSNNFTGELPFSINNLNQLTGLFLQNNGFSGSIPSINSDGLDDFNVSNNRLNGSIPQTLFKFGSSSFAGNLALCGGPLPPCNPFFPSPTPSPSIVPSNPVQKKSKKLSTAAIIAISVGSALILCLLLLFLLLCLRRRQRRQPPKPPKPETTRSIVAETATSSSKDDITGGSAEADRNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVTVTKKEFEMQIDVLGKIKHENVVPLRAFYFSKDEKLLVYDFMAAGSLSALLHGSRGSGRTPLDWDNRMRIALSAARGIAHLHVSGKVVHGNIKSSNILLRPDHDACVSDFGLNPLFGNSTPPNRVAGYRAPEVMETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDPSKGSGGHTPPPESRTPPAAVTP* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3880662 3883710 + Vvi11g404 Vvi11g404 771845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g404 653 PANTHER OS05G0588300 PROTEIN 19 632 - -
Vvi11g404 653 SUPERFAMILY L domain-like 35 215 - -
Vvi11g404 653 SUPERFAMILY Protein kinase-like (PK-like) 351 612 IPR011009 -
Vvi11g404 653 Pfam Leucine rich repeat 72 131 IPR001611 GO:0005515
Vvi11g404 653 MobiDBLite consensus disorder prediction 614 653 - -
Vvi11g404 653 MobiDBLite consensus disorder prediction 614 628 - -
Vvi11g404 653 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Vvi11g404 653 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Vvi11g404 653 PANTHER OS05G0480400 PROTEIN 19 632 - -
Vvi11g404 653 Gene3D Phosphorylase Kinase; domain 1 314 421 - -
Vvi11g404 653 Gene3D Ribonuclease Inhibitor 191 232 IPR032675 -
Vvi11g404 653 ProSiteProfiles Protein kinase domain profile. 347 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g404 653 Pfam Protein kinase domain 350 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g404 653 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vvi11g404 653 MobiDBLite consensus disorder prediction 304 319 - -
Vvi11g404 653 CDD STKc_IRAK 353 615 - -
Vvi11g404 653 MobiDBLite consensus disorder prediction 291 321 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76049 PF00069 Pkinase 5.70E-37 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g404 - - vvi:100266327 1180.62