Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g406 | ATGGCATCCCCTTCCGAACTAAGCCTTGACTGCAAACCCCACAGCTATTCTTTGCTGCTAAAATCCTTTGGAGACCAGCCTGACCAGACCCAAAAGCTTGAAGACTTCCTTGCTCGTCTCGAAGAAGAACGCCTCAAGATCGAGGTCTTCAAGCGCGAGCTACCTCTCTGCATGCAACTTCTCACGGATGCTGTGGAGGCTTCAAGGCAGCAGCTGCAGTCCTACAGAGCAAATCAAGGGGCAAGACCATTTCTTGAAGAATTCATACCCCTCAAGCATTCAACCCCGAAAGGCTCGGAAAAAACATCAAACATGTCCGACAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCCAGCAGGCGATGAAACCAAGCAGCAATCCACGCTAACATCTTCCAAGGAACCCGATATTGGCTTCACGGTTAGTCCAAAGCTGGGCTTCGATAACAAACAGAGAAATGGAGGAGCCTTCCTTCCATTCTCAAAAGAACGGAACTCGTGCCCAAGTCCAAATCTACGGAATTGCGAAGCACAGACCACAGCTGCAGCTCCCACCGCCAATACTCAAACTCACAGGAAAGCTAGGAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTAAATGCCCTTCAGATGCTTGGTGGTTCTCAAGTGGCCACCCCAAAGCAAATCAGAGAGCTGATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAGTACAGACTCCACACTAGACGACCTAGCCCAAGCCCACAAGCCACCGGAGCCGCTGCCCCTCAGCTGGTGGTCGTAGGACTAGGAGGCATATGGGTCCCACCAGAGTACGCCACCGCAGCTCACACCGGCGGCACCACCCTCTACGGTGCCCACCCGCCGTCCCACACTTCCCCACACTATTGCGGTCCCCCAGTGCCCCAAGACTTCTACGCAGCACCCGCCCAGCCCCACCACCACAGCCTCCACCACCAGCTCCACATGTACAAGGCCTCTCCCCAGACACAGAGCTCTCCGGACTCCGACATGAGGGGGGCAGGCGACCGTTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCAGTAGCTGGAAGGGTGAGAGTGGTGAGAATGGAGGAGAGAGAAAAGGGTTGGTTACGTTGAGAGATGATGGAGAAGAGAGTAATAGAGCGATGGAAGTTTAG | 1197 | 53.8 | MASPSELSLDCKPHSYSLLLKSFGDQPDQTQKLEDFLARLEEERLKIEVFKRELPLCMQLLTDAVEASRQQLQSYRANQGARPFLEEFIPLKHSTPKGSEKTSNMSDKANWMTSAQLWSPAGDETKQQSTLTSSKEPDIGFTVSPKLGFDNKQRNGGAFLPFSKERNSCPSPNLRNCEAQTTAAAPTANTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQATGAAAPQLVVVGLGGIWVPPEYATAAHTGGTTLYGAHPPSHTSPHYCGPPVPQDFYAAPAQPHHHSLHHQLHMYKASPQTQSSPDSDMRGAGDRSESIEDGKSESSSWKGESGENGGERKGLVTLRDDGEESNRAMEV* | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3913693 | 3916231 | + | Vvi11g406 | Vvi11g406 | 771847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g406 | 398 | SUPERFAMILY | Homeodomain-like | 192 | 253 | IPR009057 | - | |
Vvi11g406 | 398 | MobiDBLite | consensus disorder prediction | 349 | 398 | - | - | |
Vvi11g406 | 398 | Pfam | Myb-like DNA-binding domain | 197 | 248 | IPR001005 | - | |
Vvi11g406 | 398 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 175 | IPR044787 | GO:0003700|GO:0006355 | |
Vvi11g406 | 398 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 178 | 383 | IPR044787 | GO:0003700|GO:0006355 | |
Vvi11g406 | 398 | Coils | Coil | 33 | 53 | - | - | |
Vvi11g406 | 398 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 175 | - | - | |
Vvi11g406 | 398 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 178 | 383 | - | - | |
Vvi11g406 | 398 | MobiDBLite | consensus disorder prediction | 335 | 398 | - | - | |
Vvi11g406 | 398 | Gene3D | - | 194 | 252 | - | - | |
Vvi11g406 | 398 | Coils | Coil | 58 | 78 | - | - | |
Vvi11g406 | 398 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 192 | 252 | IPR017930 | - | |
Vvi11g406 | 398 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 195 | 250 | IPR006447 | GO:0003677 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13729 | PF00249 | Myb_DNA-binding | 8.10E-06 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g406 | - | - | vvi:100250892 | 756.903 |