Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g406 ATGGCATCCCCTTCCGAACTAAGCCTTGACTGCAAACCCCACAGCTATTCTTTGCTGCTAAAATCCTTTGGAGACCAGCCTGACCAGACCCAAAAGCTTGAAGACTTCCTTGCTCGTCTCGAAGAAGAACGCCTCAAGATCGAGGTCTTCAAGCGCGAGCTACCTCTCTGCATGCAACTTCTCACGGATGCTGTGGAGGCTTCAAGGCAGCAGCTGCAGTCCTACAGAGCAAATCAAGGGGCAAGACCATTTCTTGAAGAATTCATACCCCTCAAGCATTCAACCCCGAAAGGCTCGGAAAAAACATCAAACATGTCCGACAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCCAGCAGGCGATGAAACCAAGCAGCAATCCACGCTAACATCTTCCAAGGAACCCGATATTGGCTTCACGGTTAGTCCAAAGCTGGGCTTCGATAACAAACAGAGAAATGGAGGAGCCTTCCTTCCATTCTCAAAAGAACGGAACTCGTGCCCAAGTCCAAATCTACGGAATTGCGAAGCACAGACCACAGCTGCAGCTCCCACCGCCAATACTCAAACTCACAGGAAAGCTAGGAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTAAATGCCCTTCAGATGCTTGGTGGTTCTCAAGTGGCCACCCCAAAGCAAATCAGAGAGCTGATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAGTACAGACTCCACACTAGACGACCTAGCCCAAGCCCACAAGCCACCGGAGCCGCTGCCCCTCAGCTGGTGGTCGTAGGACTAGGAGGCATATGGGTCCCACCAGAGTACGCCACCGCAGCTCACACCGGCGGCACCACCCTCTACGGTGCCCACCCGCCGTCCCACACTTCCCCACACTATTGCGGTCCCCCAGTGCCCCAAGACTTCTACGCAGCACCCGCCCAGCCCCACCACCACAGCCTCCACCACCAGCTCCACATGTACAAGGCCTCTCCCCAGACACAGAGCTCTCCGGACTCCGACATGAGGGGGGCAGGCGACCGTTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCAGTAGCTGGAAGGGTGAGAGTGGTGAGAATGGAGGAGAGAGAAAAGGGTTGGTTACGTTGAGAGATGATGGAGAAGAGAGTAATAGAGCGATGGAAGTTTAG 1197 53.8 MASPSELSLDCKPHSYSLLLKSFGDQPDQTQKLEDFLARLEEERLKIEVFKRELPLCMQLLTDAVEASRQQLQSYRANQGARPFLEEFIPLKHSTPKGSEKTSNMSDKANWMTSAQLWSPAGDETKQQSTLTSSKEPDIGFTVSPKLGFDNKQRNGGAFLPFSKERNSCPSPNLRNCEAQTTAAAPTANTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQATGAAAPQLVVVGLGGIWVPPEYATAAHTGGTTLYGAHPPSHTSPHYCGPPVPQDFYAAPAQPHHHSLHHQLHMYKASPQTQSSPDSDMRGAGDRSESIEDGKSESSSWKGESGENGGERKGLVTLRDDGEESNRAMEV* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3913693 3916231 + Vvi11g406 Vvi11g406 771847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g406 398 SUPERFAMILY Homeodomain-like 192 253 IPR009057 -
Vvi11g406 398 MobiDBLite consensus disorder prediction 349 398 - -
Vvi11g406 398 Pfam Myb-like DNA-binding domain 197 248 IPR001005 -
Vvi11g406 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 175 IPR044787 GO:0003700|GO:0006355
Vvi11g406 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 178 383 IPR044787 GO:0003700|GO:0006355
Vvi11g406 398 Coils Coil 33 53 - -
Vvi11g406 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 175 - -
Vvi11g406 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 178 383 - -
Vvi11g406 398 MobiDBLite consensus disorder prediction 335 398 - -
Vvi11g406 398 Gene3D - 194 252 - -
Vvi11g406 398 Coils Coil 58 78 - -
Vvi11g406 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 252 IPR017930 -
Vvi11g406 398 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 195 250 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g406 - - - vvi:100250892 756.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g406 Blo01g00709 . Bda01g01870 . . Bpe02g02047 . . Cmo10g00628 Cmo11g00586 Cma05g01320 Cma12g01229 Car05g01236 Car12g01201 . Cpe04g01152 Cpe18g00460 . . . . . . . Cla11g00246 . Cec11g0279 Cco11g0288 Clacu11g0408 Cmu11g0258 Cre11g0755 Cone2ag0272 Cone16ag0767 . . Lsi06g00912 Csa02g00156 Chy05g01345 Cme02g01289 . . . . . . Bma01g00416 Bma06g01048 . Cmo05g01332 Cmo12g01257 Cma10g00587 Cma11g00582 Car10g00543 Car11g00459 Cpe11g01094 Cpe07g00989 . . . . . . . Cla06g01045 Cam06g1170 Cec06g1209 Cco06g1216 Clacu06g1129 Cmu06g1101 Cre06g1910 Lsi11g00287 Csa01g02096 Chy02g01946 Cme05g01953
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13729 PF00249 Myb_DNA-binding 8.10E-06 CL0123 Vvi TF