Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g406 ATGGCATCCCCTTCCGAACTAAGCCTTGACTGCAAACCCCACAGCTATTCTTTGCTGCTAAAATCCTTTGGAGACCAGCCTGACCAGACCCAAAAGCTTGAAGACTTCCTTGCTCGTCTCGAAGAAGAACGCCTCAAGATCGAGGTCTTCAAGCGCGAGCTACCTCTCTGCATGCAACTTCTCACGGATGCTGTGGAGGCTTCAAGGCAGCAGCTGCAGTCCTACAGAGCAAATCAAGGGGCAAGACCATTTCTTGAAGAATTCATACCCCTCAAGCATTCAACCCCGAAAGGCTCGGAAAAAACATCAAACATGTCCGACAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCCAGCAGGCGATGAAACCAAGCAGCAATCCACGCTAACATCTTCCAAGGAACCCGATATTGGCTTCACGGTTAGTCCAAAGCTGGGCTTCGATAACAAACAGAGAAATGGAGGAGCCTTCCTTCCATTCTCAAAAGAACGGAACTCGTGCCCAAGTCCAAATCTACGGAATTGCGAAGCACAGACCACAGCTGCAGCTCCCACCGCCAATACTCAAACTCACAGGAAAGCTAGGAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTAAATGCCCTTCAGATGCTTGGTGGTTCTCAAGTGGCCACCCCAAAGCAAATCAGAGAGCTGATGAAAGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAGTACAGACTCCACACTAGACGACCTAGCCCAAGCCCACAAGCCACCGGAGCCGCTGCCCCTCAGCTGGTGGTCGTAGGACTAGGAGGCATATGGGTCCCACCAGAGTACGCCACCGCAGCTCACACCGGCGGCACCACCCTCTACGGTGCCCACCCGCCGTCCCACACTTCCCCACACTATTGCGGTCCCCCAGTGCCCCAAGACTTCTACGCAGCACCCGCCCAGCCCCACCACCACAGCCTCCACCACCAGCTCCACATGTACAAGGCCTCTCCCCAGACACAGAGCTCTCCGGACTCCGACATGAGGGGGGCAGGCGACCGTTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCAGTAGCTGGAAGGGTGAGAGTGGTGAGAATGGAGGAGAGAGAAAAGGGTTGGTTACGTTGAGAGATGATGGAGAAGAGAGTAATAGAGCGATGGAAGTTTAG 1197 53.8 MASPSELSLDCKPHSYSLLLKSFGDQPDQTQKLEDFLARLEEERLKIEVFKRELPLCMQLLTDAVEASRQQLQSYRANQGARPFLEEFIPLKHSTPKGSEKTSNMSDKANWMTSAQLWSPAGDETKQQSTLTSSKEPDIGFTVSPKLGFDNKQRNGGAFLPFSKERNSCPSPNLRNCEAQTTAAAPTANTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQATGAAAPQLVVVGLGGIWVPPEYATAAHTGGTTLYGAHPPSHTSPHYCGPPVPQDFYAAPAQPHHHSLHHQLHMYKASPQTQSSPDSDMRGAGDRSESIEDGKSESSSWKGESGENGGERKGLVTLRDDGEESNRAMEV* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3913693 3916231 + Vvi11g406 Vvi11g406 771847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g406 398 SUPERFAMILY Homeodomain-like 192 253 IPR009057 -
Vvi11g406 398 MobiDBLite consensus disorder prediction 349 398 - -
Vvi11g406 398 Pfam Myb-like DNA-binding domain 197 248 IPR001005 -
Vvi11g406 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 175 IPR044787 GO:0003700|GO:0006355
Vvi11g406 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 178 383 IPR044787 GO:0003700|GO:0006355
Vvi11g406 398 Coils Coil 33 53 - -
Vvi11g406 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 175 - -
Vvi11g406 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 178 383 - -
Vvi11g406 398 MobiDBLite consensus disorder prediction 335 398 - -
Vvi11g406 398 Gene3D - 194 252 - -
Vvi11g406 398 Coils Coil 58 78 - -
Vvi11g406 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 252 IPR017930 -
Vvi11g406 398 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 195 250 IPR006447 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13729 PF00249 Myb_DNA-binding 8.10E-06 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g406 - - vvi:100250892 756.903