Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g408 ATGCCCAGCACTGAAGAAAGCTTGGAAAATGCAAAAAGGAGTATAGGGAGGAGAAAGGGAAGGAGAAGGGGGAAAGGAGCCAAAGTGGAGCAGTTGCAGGATCCAAAGCTTGATTTAAGTGTTGGTTCTCATGACTCAAGCAAAGGTCTGGTGTTCCACCGCAGGCCCGGTTATGGTCAATTGGGAAGGAAATGTGTAGTTAAAGCCAACCATTTCCTAGCGCAAGTGCCAGATACAGACTTGAGTCAATATAGTGTTACCATAACCCCCGAAGTTGCTTCTCGCAAAATCAACAAATCTATCATGGCCCAGTTGGTGAAACTTCACAGAGATACTGACCTAGGGATGAGGCTCCCTGTTTATGATGGTAAACGGGTCCTTTACACTGCTGGACTGCTTCCATTTGTATCAAAAGAGTTCACTGTGAAACTGGTTGAAGAGGATGAGGGGACAGGGATTACAAAGGAGCGAGAGTTCAAAGTGACAATCAAGTTTGTAGGTATCACTAGTATGGTCCAATTGCGAGAGTTTCTTGCTGGGAAACAAGTTGATACTCCCCATGAAATAATTAGGATCTTTGATATTGTGTTAAATCAACTAGCAGCCCAAAGGTATGTATCAGTTGGGAGATGCTTATATTCTCCTGATATTAAAAATCCTCAGCAACTAGGTGGGGGTTTACAATCATGGCAAGGCTTCTATAAGAGTATAAGGCCAACTCAGATGGGGTTATCATTGAACATCGATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGACCGTGTCAAGGTTAAGAAAGCTCTTAGAGGTGTTAAAGTTGAAGTTACGCACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTGACATCACAACCTACAAGGGAACTAATTTTCCCAGTTGATGAGCAAATGAACATGAAATCAGTTGTTGAGTACTTTCAGGAGATGTATGGATTTACCATTCGATATTCTCATCTACCTTGCCTCCAAGTAGGTAACCAGAGGAAAGTGAATTACTTACCAATGGAGGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAGAAACAGACATTTTACAGACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTGCACCATGGCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAGAAAATGATAAATGGAAGCACTATCAATTACTGGGCTTGCATCAACTTCTCACGAAGTGTTCAGGAGAGTACTGTAAGCGGTTTTTGTCATCAGCTGGTTCAAATGTGCAAAGTTTCTGGCATGGAATTCAACCATGAGCCAGTAATTCCAATACATTCAGCTAGACCGGATCAGGTTAAGAAGGCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGGTGATTTGAAGCGGATTTGTGACACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTACTAAAAATGTCTACAAGATTAGCAACCAGTACCTGGCAAACGTGTCACTTAAAATCAATGTTAAGATGGGTGGAAGAAATACTGTGCTTTTAGATGCTTTGAGTTCAGGAATTCCTTTGGTTAGTGACATTCCAACAATCATATTTGGAGCCGATGTAACTCATCCAGAGACTGGAGATGACTCTTGTCCATCAATTGCTGCTGTAGTAGCCTCCCAAGACTGGCCAGAAGTCACCAAGTATGCTGGATTGGTATGTGCTCAGGCTCATCGGCAAGAACTTATTCAAGATTTGTATAAAACCTGGAAAGATCCTCAAGGGGGCACAGTTACTGGAGGCATGATCAGAGAGCTTTTACTTTCATTTAAGGCAGCCACTGGAAAAAAACCATTGAGGATAATATTTTACAGGGATGGTGTCAGTGAAGGGCAGTTCTACCAGGTTCTACTATATGAACTTGATGCCATTCGTAAGGCCTGCGCATCATTGGAACCTAGTTACCAACCTCCAGTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGGTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGGGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACGTATGCAAGGTGCACTCGGTCTGTTTCTCTAGTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGCAATACCAAATTGCATGCGCACATCAAATGAATCACGCGTCCGGCCCCTGCCAGCATTGAATGAGAAGGTGAAGAATGTGATGTTCTACTGTTAG 2718 42.86 MPSTEESLENAKRSIGRRKGRRRGKGAKVEQLQDPKLDLSVGSHDSSKGLVFHRRPGYGQLGRKCVVKANHFLAQVPDTDLSQYSVTITPEVASRKINKSIMAQLVKLHRDTDLGMRLPVYDGKRVLYTAGLLPFVSKEFTVKLVEEDEGTGITKEREFKVTIKFVGITSMVQLREFLAGKQVDTPHEIIRIFDIVLNQLAAQRYVSVGRCLYSPDIKNPQQLGGGLQSWQGFYKSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLDKDVFSRPLSDADRVKVKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPVDEQMNMKSVVEYFQEMYGFTIRYSHLPCLQVGNQRKVNYLPMEACKIIGGQRYTKGLTDKQITSLLKVTCQRPRDRETDILQTINQNGYEKDPYAKEFGITVDEKLASVEARVLPAPWLKYHDTGKEKEYLPQVGQWNMTNKKMINGSTINYWACINFSRSVQESTVSGFCHQLVQMCKVSGMEFNHEPVIPIHSARPDQVKKALKHVYSAAANKLGGKELELLIAILPDNNGSLYGDLKRICDTDLGLISQCCLTKNVYKISNQYLANVSLKINVKMGGRNTVLLDALSSGIPLVSDIPTIIFGADVTHPETGDDSCPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWKDPQGGTVTGGMIRELLLSFKAATGKKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFASNHNDKSSTDRSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSLVPPAYYAHLAAYRARFYMEPDKPENAIPNCMRTSNESRVRPLPALNEKVKNVMFYC* 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3938425 3949275 + Vvi11g408 Vvi11g408 771849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g408 905 Gene3D - 616 905 IPR036397 GO:0003676
Vvi11g408 905 ProSiteProfiles Piwi domain profile. 547 868 IPR003165 GO:0003676
Vvi11g408 905 MobiDBLite consensus disorder prediction 1 35 - -
Vvi11g408 905 CDD Piwi_ago-like 417 867 IPR045246 -
Vvi11g408 905 SMART DUF1785_2 206 258 IPR014811 -
Vvi11g408 905 Pfam Argonaute linker 2 domain 399 445 IPR032472 -
Vvi11g408 905 Pfam Argonaute linker 1 domain 207 257 IPR014811 -
Vvi11g408 905 SMART PAZ_2_a_3 268 404 IPR003100 GO:0005515
Vvi11g408 905 Pfam Piwi domain 548 867 IPR003165 GO:0003676
Vvi11g408 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 29 904 - -
Vvi11g408 905 SUPERFAMILY PAZ domain 253 413 IPR036085 GO:0005515
Vvi11g408 905 SMART Piwi_a_2 547 868 IPR003165 GO:0003676
Vvi11g408 905 Gene3D paz domain 252 377 - -
Vvi11g408 905 Pfam Mid domain of argonaute 456 533 IPR032473 -
Vvi11g408 905 CDD PAZ_argonaute_like 258 372 - -
Vvi11g408 905 ProSiteProfiles PAZ domain profile. 259 373 IPR003100 GO:0005515
Vvi11g408 905 SUPERFAMILY Ribonuclease H-like 536 869 IPR012337 -
Vvi11g408 905 Gene3D - 437 610 - -
Vvi11g408 905 Pfam N-terminal domain of argonaute 63 197 IPR032474 -
Vvi11g408 905 Pfam PAZ domain 284 389 IPR003100 GO:0005515
Vvi11g408 905 PANTHER PROTEIN ARGONAUTE 10 29 904 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g408 K11593 - vvi:100268067 1796.17