Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g409 ATGACCCAGCCCTCCCGGAATCATCATCAGCTTGACCTATGGGACAAACTTGATTGTTCTACAATCCAACTCTGCTGTGACATGGACAATCACCGGCCCACTGTCGGCTTCTCCTGCCTTCCATCAGAGCTTCTTCAGAGCATTTTCCTCCGCCTCGCTCTGCCGGATATCGTCCGTCTTAGATCAATCAACAAGTCCATTGCCTCCATTGTATCTGACAAAGACTTTGTTCGTGACTGCAACACTCAGTTCTTATCCGCCAATTGGCTTTTCATTTACAGCAAGGGATGGCGTCGTGACTCGGTTCTTCACGGCTTCACCGATCAGTCTGATCACTGGTTCAAGATTCCGATTGCCGGATTATTGATGCCGGTGATTCATGCAACTGAAGATCTCTATTTTCTGGCTGCATCGGGGAATTTTTTCTTGTTTGTGTCCAACACTCGCAAGGAACTCCTTTCGGTAAACCTTATGAAAAGGACCGTTAAGAAAATCCCTCCAAGCCCATTGGGCCCACGTGGTACTTCTTCGTGGCGGCGGTCCGGCATGAAATTAGTGGCTGGGCCGCCTGGTTCGGACTCTTTCCGGTTTTTATTTGCTGAGTTGGTGGAGAACCGTCCGATCATGTTCGAATACAACTCGGATGATGACAAGTGGCAAAGCATGGAAGCAGAAGAAAACCATGGGGATTTGCCGCGTGTCTTTGAAGGAGCGGGTCCCTTGATTTTCTTAAGCGTGGTTAATGGAACGAATGAAAGCGTGGTGCTAGCCATCGGATCCCAAGGCAACAACACACCAGTGGTTCTAAGGCCAAGGTTTAGTGGAGGAGCAATTGAGCAGCGGCAAGTGGCCAGGGTGTTGAAGGAGATAGAAATGTGGGGGTTGAGCCCGAATGGAAGACGGTGGGAGCGTATTTCAAAGCTCCCAGGGGCTACAATGGAGCAAATAAAGAGAGCGTATGGAGTGATAATGGGGTGTGTAGAGGAAAGGAACGGGACAATCAGGGCCCTACTGATGTCTAATTACCGAGGCTTATGGCACATAATTTGGCTATCTTATGATATAGGAAGGGATGATTGGACGTTGCTCCCCCTCCCTGATTTCGATATGAAGGGTTTGAACATGGCCGGAATCACCTTCTCCTCTGGGCTCACCTTGCATCACTCCCATATGGGGCCTTACGACTCTGCCATCTCTACCGGCAGCACCACCAGCTCCCCCTCTTCTGCCGCCAAACCGTCTGACATCGATGGACTTCTCGCCGGCGCCGGCTACAAGGTCCGCTCTACGGAGCTCCATCAAGTCGCCCAGCGTCTGGAGCGACTGGAGACGGTGATGGTCAACGCTCCGTCGGAGATCTCACAGCTGGCCTCCGATGTTCTTCACTGCAACCCCTCCGATATCGCCTCCTGGGTGGACTCGATGCTCTTCGAGTTCAATCCGCCCGTGTCAATACCTTCTGATCTATCGGATTTTTCTGATCTCACTTATATTGACAGCGTGGTGACTTCGCGGCTGGAAGATGTGAAGCCGTGGATGCTACAGGTGAGCCCAAAGGAAGCCGTAGCTATAAACTCAATCATGCAGCTTCACCGGCTTCTCGGATCCGGTCCGACCCGGGTGTCTGCCATAGAAACGGTGCTTGGGTGGATCCGAAGCTTGAACCCGAAAATCGTGACAGTGGTTGAACAGGAAGCGAATCATAACCAATCAGAGTTCTTGGATCGGTTCACCGAGGCCCTGTACTACTACTCCACAATGTTCGATTCCCTAGAGGCTTGCTCTCTCCAGCCGGAGAAAGCCGTAGCCGAGATTTACATCCAGAAAGAGATATGCAACGTGTTGTGTTGCGAAGGGTCGGCTCGAGTGGAAAGGCACGAGCCGTTGGCTAAGTGGAGGAATCGGCTTGGAGCAGCAGGGTTCAGGCCGTTGAACCTGGGATCCAATGCGTTCAAACAAGCCAGTATGCTGCTGACGCTGTTCTCGGCTGAGGGGTACTGTGTTGAGGAGCATGACGGGTGTTTGACGCTAGGCTGGCACAGCCGCCCTCTCATAGCGGCTTCGGCTTGGCAACCCCTCCTAGACACAGTTATAAATCATAATAATCTCCTCTAA 2115 51.96 MTQPSRNHHQLDLWDKLDCSTIQLCCDMDNHRPTVGFSCLPSELLQSIFLRLALPDIVRLRSINKSIASIVSDKDFVRDCNTQFLSANWLFIYSKGWRRDSVLHGFTDQSDHWFKIPIAGLLMPVIHATEDLYFLAASGNFFLFVSNTRKELLSVNLMKRTVKKIPPSPLGPRGTSSWRRSGMKLVAGPPGSDSFRFLFAELVENRPIMFEYNSDDDKWQSMEAEENHGDLPRVFEGAGPLIFLSVVNGTNESVVLAIGSQGNNTPVVLRPRFSGGAIEQRQVARVLKEIEMWGLSPNGRRWERISKLPGATMEQIKRAYGVIMGCVEERNGTIRALLMSNYRGLWHIIWLSYDIGRDDWTLLPLPDFDMKGLNMAGITFSSGLTLHHSHMGPYDSAISTGSTTSSPSSAAKPSDIDGLLAGAGYKVRSTELHQVAQRLERLETVMVNAPSEISQLASDVLHCNPSDIASWVDSMLFEFNPPVSIPSDLSDFSDLTYIDSVVTSRLEDVKPWMLQVSPKEAVAINSIMQLHRLLGSGPTRVSAIETVLGWIRSLNPKIVTVVEQEANHNQSEFLDRFTEALYYYSTMFDSLEACSLQPEKAVAEIYIQKEICNVLCCEGSARVERHEPLAKWRNRLGAAGFRPLNLGSNAFKQASMLLTLFSAEGYCVEEHDGCLTLGWHSRPLIAASAWQPLLDTVINHNNLL* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3959482 3965721 - Vvi11g409 Vvi11g409 771850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g409 704 SUPERFAMILY F-box domain 30 83 IPR036047 GO:0005515
Vvi11g409 704 Pfam Transcriptional regulator DELLA protein N terminal 417 482 IPR021914 -
Vvi11g409 704 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR FAMILY PROTEIN 34 262 - -
Vvi11g409 704 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR FAMILY PROTEIN 278 386 - -
Vvi11g409 704 SMART fbox_2 40 80 IPR001810 GO:0005515
Vvi11g409 704 Pfam F-box domain 37 77 IPR001810 GO:0005515
Vvi11g409 704 Pfam GRAS domain family 499 691 IPR005202 -
Vvi11g409 704 Gene3D - 415 479 IPR038088 -
Vvi11g409 704 ProSiteProfiles GRAS family profile. 407 691 IPR005202 -
Vvi11g409 704 PANTHER F-BOX/KELCH-REPEAT PROTEIN 34 262 - -
Vvi11g409 704 PANTHER F-BOX/KELCH-REPEAT PROTEIN 278 386 - -
Vvi11g409 704 SMART DELLA_2 417 489 - -
Vvi11g409 704 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13730 PF03514 GRAS 1.00E-67 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g409 - - vvi:100262914 714.146