Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g409 ATGACCCAGCCCTCCCGGAATCATCATCAGCTTGACCTATGGGACAAACTTGATTGTTCTACAATCCAACTCTGCTGTGACATGGACAATCACCGGCCCACTGTCGGCTTCTCCTGCCTTCCATCAGAGCTTCTTCAGAGCATTTTCCTCCGCCTCGCTCTGCCGGATATCGTCCGTCTTAGATCAATCAACAAGTCCATTGCCTCCATTGTATCTGACAAAGACTTTGTTCGTGACTGCAACACTCAGTTCTTATCCGCCAATTGGCTTTTCATTTACAGCAAGGGATGGCGTCGTGACTCGGTTCTTCACGGCTTCACCGATCAGTCTGATCACTGGTTCAAGATTCCGATTGCCGGATTATTGATGCCGGTGATTCATGCAACTGAAGATCTCTATTTTCTGGCTGCATCGGGGAATTTTTTCTTGTTTGTGTCCAACACTCGCAAGGAACTCCTTTCGGTAAACCTTATGAAAAGGACCGTTAAGAAAATCCCTCCAAGCCCATTGGGCCCACGTGGTACTTCTTCGTGGCGGCGGTCCGGCATGAAATTAGTGGCTGGGCCGCCTGGTTCGGACTCTTTCCGGTTTTTATTTGCTGAGTTGGTGGAGAACCGTCCGATCATGTTCGAATACAACTCGGATGATGACAAGTGGCAAAGCATGGAAGCAGAAGAAAACCATGGGGATTTGCCGCGTGTCTTTGAAGGAGCGGGTCCCTTGATTTTCTTAAGCGTGGTTAATGGAACGAATGAAAGCGTGGTGCTAGCCATCGGATCCCAAGGCAACAACACACCAGTGGTTCTAAGGCCAAGGTTTAGTGGAGGAGCAATTGAGCAGCGGCAAGTGGCCAGGGTGTTGAAGGAGATAGAAATGTGGGGGTTGAGCCCGAATGGAAGACGGTGGGAGCGTATTTCAAAGCTCCCAGGGGCTACAATGGAGCAAATAAAGAGAGCGTATGGAGTGATAATGGGGTGTGTAGAGGAAAGGAACGGGACAATCAGGGCCCTACTGATGTCTAATTACCGAGGCTTATGGCACATAATTTGGCTATCTTATGATATAGGAAGGGATGATTGGACGTTGCTCCCCCTCCCTGATTTCGATATGAAGGGTTTGAACATGGCCGGAATCACCTTCTCCTCTGGGCTCACCTTGCATCACTCCCATATGGGGCCTTACGACTCTGCCATCTCTACCGGCAGCACCACCAGCTCCCCCTCTTCTGCCGCCAAACCGTCTGACATCGATGGACTTCTCGCCGGCGCCGGCTACAAGGTCCGCTCTACGGAGCTCCATCAAGTCGCCCAGCGTCTGGAGCGACTGGAGACGGTGATGGTCAACGCTCCGTCGGAGATCTCACAGCTGGCCTCCGATGTTCTTCACTGCAACCCCTCCGATATCGCCTCCTGGGTGGACTCGATGCTCTTCGAGTTCAATCCGCCCGTGTCAATACCTTCTGATCTATCGGATTTTTCTGATCTCACTTATATTGACAGCGTGGTGACTTCGCGGCTGGAAGATGTGAAGCCGTGGATGCTACAGGTGAGCCCAAAGGAAGCCGTAGCTATAAACTCAATCATGCAGCTTCACCGGCTTCTCGGATCCGGTCCGACCCGGGTGTCTGCCATAGAAACGGTGCTTGGGTGGATCCGAAGCTTGAACCCGAAAATCGTGACAGTGGTTGAACAGGAAGCGAATCATAACCAATCAGAGTTCTTGGATCGGTTCACCGAGGCCCTGTACTACTACTCCACAATGTTCGATTCCCTAGAGGCTTGCTCTCTCCAGCCGGAGAAAGCCGTAGCCGAGATTTACATCCAGAAAGAGATATGCAACGTGTTGTGTTGCGAAGGGTCGGCTCGAGTGGAAAGGCACGAGCCGTTGGCTAAGTGGAGGAATCGGCTTGGAGCAGCAGGGTTCAGGCCGTTGAACCTGGGATCCAATGCGTTCAAACAAGCCAGTATGCTGCTGACGCTGTTCTCGGCTGAGGGGTACTGTGTTGAGGAGCATGACGGGTGTTTGACGCTAGGCTGGCACAGCCGCCCTCTCATAGCGGCTTCGGCTTGGCAACCCCTCCTAGACACAGTTATAAATCATAATAATCTCCTCTAA 2115 51.96 MTQPSRNHHQLDLWDKLDCSTIQLCCDMDNHRPTVGFSCLPSELLQSIFLRLALPDIVRLRSINKSIASIVSDKDFVRDCNTQFLSANWLFIYSKGWRRDSVLHGFTDQSDHWFKIPIAGLLMPVIHATEDLYFLAASGNFFLFVSNTRKELLSVNLMKRTVKKIPPSPLGPRGTSSWRRSGMKLVAGPPGSDSFRFLFAELVENRPIMFEYNSDDDKWQSMEAEENHGDLPRVFEGAGPLIFLSVVNGTNESVVLAIGSQGNNTPVVLRPRFSGGAIEQRQVARVLKEIEMWGLSPNGRRWERISKLPGATMEQIKRAYGVIMGCVEERNGTIRALLMSNYRGLWHIIWLSYDIGRDDWTLLPLPDFDMKGLNMAGITFSSGLTLHHSHMGPYDSAISTGSTTSSPSSAAKPSDIDGLLAGAGYKVRSTELHQVAQRLERLETVMVNAPSEISQLASDVLHCNPSDIASWVDSMLFEFNPPVSIPSDLSDFSDLTYIDSVVTSRLEDVKPWMLQVSPKEAVAINSIMQLHRLLGSGPTRVSAIETVLGWIRSLNPKIVTVVEQEANHNQSEFLDRFTEALYYYSTMFDSLEACSLQPEKAVAEIYIQKEICNVLCCEGSARVERHEPLAKWRNRLGAAGFRPLNLGSNAFKQASMLLTLFSAEGYCVEEHDGCLTLGWHSRPLIAASAWQPLLDTVINHNNLL* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3959482 3965721 - Vvi11g409 Vvi11g409 771850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g409 704 SUPERFAMILY F-box domain 30 83 IPR036047 GO:0005515
Vvi11g409 704 Pfam Transcriptional regulator DELLA protein N terminal 417 482 IPR021914 -
Vvi11g409 704 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR FAMILY PROTEIN 34 262 - -
Vvi11g409 704 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR FAMILY PROTEIN 278 386 - -
Vvi11g409 704 SMART fbox_2 40 80 IPR001810 GO:0005515
Vvi11g409 704 Pfam F-box domain 37 77 IPR001810 GO:0005515
Vvi11g409 704 Pfam GRAS domain family 499 691 IPR005202 -
Vvi11g409 704 Gene3D - 415 479 IPR038088 -
Vvi11g409 704 ProSiteProfiles GRAS family profile. 407 691 IPR005202 -
Vvi11g409 704 PANTHER F-BOX/KELCH-REPEAT PROTEIN 34 262 - -
Vvi11g409 704 PANTHER F-BOX/KELCH-REPEAT PROTEIN 278 386 - -
Vvi11g409 704 SMART DELLA_2 417 489 - -
Vvi11g409 704 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g409 - - - vvi:100262914 714.146
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g409 . . . . . . Bma07g00461 . . Cmo11g00583 . . . . Sed08g0736 Cpe04g01154 Cpe18g00461 Bhi02g01068 Tan09g1343 Cmetu02g1460 . Hepe09g0722 . . . . . . . . . . . . . Lsi06g00916 . . Cme02g01276 . . . Bda09g01170 Bpe08g00454 . . Bma06g01086 . . . Cma10g00586 Cma11g00578 Car10g00542 Car11g00457 . . . . . . . . . Cla06g01047 Cam06g1173 Cec06g1212 Cco06g1218 Clacu06g1131 Cmu06g1103 Cre06g1912 . Csa01g02098 Chy02g01949 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi6g470 ECH 141 496 GRAS Transcription Factor Family AT2G29060 53.9 7.6e-120 428.3
Vvi6g470 ECH 136 496 GRAS Transcription Factor Family AT2G37650 55.0 7.8e-123 438.3
Vvi13g315 ECH 107 436 GRAS Transcription Factor Family AT2G37650 53.8 2.5e-113 406.8
Vvi9g92 . 1 495 GRAS Transcription Factor Family AT3G13840 53.7 1.3e-140 496.9
Vvi6g470 ECH 124 497 GRAS Transcription Factor Family AT3G46600 50.2 5.9e-110 395.2
Vvi6g470 ECH 139 496 GRAS Transcription Factor Family AT1G07530 57.1 6.1e-129 458.8
Vvi4g933 . 116 568 GRAS Transcription Factor Family AT4G36710 53.1 6.8e-118 421.4
Vvi8g4 ECH 290 650 GRAS Transcription Factor Family AT5G41920 58.8 9.1e-116 414.1
Vvi4g959 . 1 544 GRAS Transcription Factor Family AT5G66770 60.5 2.0e-172 602.8
Vvi19g614 ECH 1 525 GRAS Transcription Factor Family AT1G50600 59.5 7.5e-171 597.4
Vvi12g674 ECH 89 485 GRAS Transcription Factor Family AT1G50600 64.4 9.5e-158 553.9
Vvi19g405 . 177 393 GRAS Transcription Factor Family AT1G50600 61.3 1.3e-74 277.7
Vvi4g1306 ECH 192 332 GRAS Transcription Factor Family AT1G50600 57.4 2.2e-45 180.6
Vvi2g364 . 1 390 GRAS Transcription Factor Family AT1G63100 51.8 4.5e-96 349.4
Vvi2g365 . 1 135 GRAS Transcription Factor Family AT1G63100 57.8 2.7e-40 164.1
Vvi1g454 . 42 377 GRAS Transcription Factor Family AT1G14920 60.0 1.9e-121 433.3
Vvi14g715 . 1 242 GRAS Transcription Factor Family AT1G14920 62.3 7.8e-83 305.1
Vvi11g409 . 502 691 GRAS Transcription Factor Family AT1G14920 57.5 4.6e-59 226.1
Vvi19g799 . 36 414 GRAS Transcription Factor Family AT1G55580 55.7 2.1e-113 406.4
Vvi1g454 . 28 377 GRAS Transcription Factor Family AT1G66350 54.7 2.7e-109 392.9
Vvi14g715 . 1 234 GRAS Transcription Factor Family AT1G66350 67.7 6.1e-85 312.0
Vvi11g409 . 500 691 GRAS Transcription Factor Family AT1G66350 53.6 3.0e-55 213.4
Vvi12g674 ECH 55 485 GRAS Transcription Factor Family AT5G48150 71.8 2.2e-188 655.6
Vvi19g614 ECH 95 527 GRAS Transcription Factor Family AT5G48150 71.3 5.7e-181 630.9
Vvi19g405 . 181 393 GRAS Transcription Factor Family AT5G48150 66.2 1.1e-78 291.2
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT5G48150 57.7 4.4e-48 189.5
Vvi1g454 . 44 377 GRAS Transcription Factor Family AT2G01570 58.1 2.2e-123 439.9
Vvi14g715 . 1 242 GRAS Transcription Factor Family AT2G01570 54.4 2.1e-81 300.4
Vvi11g409 . 502 691 GRAS Transcription Factor Family AT2G01570 56.0 1.1e-56 218.4
Vvi1g454 . 28 377 GRAS Transcription Factor Family AT1G66350 54.7 2.7e-109 392.9
Vvi14g715 . 1 234 GRAS Transcription Factor Family AT1G66350 67.7 6.1e-85 312.0
Vvi11g409 . 500 691 GRAS Transcription Factor Family AT1G66350 53.6 3.0e-55 213.4
Vvi1g454 . 44 376 GRAS Transcription Factor Family AT3G03450 53.7 2.0e-102 370.2
Vvi14g715 . 1 243 GRAS Transcription Factor Family AT3G03450 58.5 1.6e-78 290.8
Vvi11g409 . 506 691 GRAS Transcription Factor Family AT3G03450 52.6 1.4e-50 198.0
Vvi1g454 . 40 382 GRAS Transcription Factor Family AT5G17490 52.8 6.1e-96 348.6
Vvi14g715 . 1 236 GRAS Transcription Factor Family AT5G17490 61.1 5.7e-70 262.3
Vvi18g1195 ECH 1 336 GRAS Transcription Factor Family AT1G21450 56.8 3.3e-122 436.0
Vvi12g674 ECH 136 485 GRAS Transcription Factor Family AT1G21450 55.3 1.6e-113 407.1
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT1G21450 78.3 4.2e-61 233.0
Vvi19g405 . 183 393 GRAS Transcription Factor Family AT1G21450 52.4 3.0e-59 226.9
Vvi6g470 ECH 134 498 GRAS Transcription Factor Family AT5G59450 50.4 2.7e-111 399.8
Vvi19g614 ECH 1 525 GRAS Transcription Factor Family AT4G17230 53.6 6.7e-151 531.2
Vvi12g674 ECH 1 484 GRAS Transcription Factor Family AT4G17230 50.8 3.0e-143 505.8
Vvi19g405 . 181 393 GRAS Transcription Factor Family AT4G17230 54.0 1.6e-64 244.2
Vvi4g1306 ECH 191 331 GRAS Transcription Factor Family AT4G17230 51.1 4.0e-39 159.8
Vvi19g614 ECH 116 527 GRAS Transcription Factor Family AT2G04890 65.4 2.0e-155 545.8
Vvi12g674 ECH 128 485 GRAS Transcription Factor Family AT2G04890 73.5 1.7e-154 542.7
Vvi19g405 . 182 393 GRAS Transcription Factor Family AT2G04890 64.6 2.2e-77 286.6
Vvi4g1306 ECH 191 332 GRAS Transcription Factor Family AT2G04890 56.3 1.3e-48 191.0
Vvi13randomg138 . 1 433 GRAS Transcription Factor Family AT1G50420 62.0 6.9e-163 570.9
Vvi6g948 ECH 5 279 GRAS Transcription Factor Family AT1G50420 70.2 3.9e-105 379.0
Vvi15g419 . 84 573 GRAS Transcription Factor Family AT4G00150 57.0 1.0e-141 500.7
Vvi2g526 . 148 512 GRAS Transcription Factor Family AT4G00150 52.7 5.3e-98 355.5
Vvi4g959 . 1 544 GRAS Transcription Factor Family AT3G50650 53.6 8.9e-143 504.2
Vvi8g4 ECH 98 649 GRAS Transcription Factor Family AT3G54220 65.2 2.5e-208 722.2
Vvi7g919 . 52 419 GRAS Transcription Factor Family AT4G37650 68.1 4.6e-152 535.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13730 PF03514 GRAS 1.00E-67 CL0063 Vvi TF