Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g41 ATGGCGACTGCTCCAACGATTTCAACGAGGAGTTTGCCATCGTTTGAGGGACTTAGACCTTCAACTGTCAGAATTTCATCTATGGGTCTACCATTGAAAGCAGGTGGTCTCACCCAGAGGTCCTTTCGGAGTCTGGTTGTCAGAGCTGCCACTGTTGTTACCCCCAAGTACACTTCCCTGAAGCCTTTGGGTGACAGAGTGCTGGTAAAGATTAAAACTGCAGAGGAGAAGACTGTCGGTGGTATTTTACTTCCAACTACTGCTCAAACAAAACCACAAGGAGGGGAGGTTGTTGCCGTAGGAGAAGGCAAGACAATTGGGAAGAACAAATTGGACATTTGTGTGAAGACTGGTGCCCAGGTAGTGTATTCCAAGTACGCAGGGACAGAGGTGGAGTTCAATGGATCAAATCATCTGATATTGAAGGAGGATGACATTGTTGGTATTCTCGAGACAGATGATGTTAAGGATCTGAAGCCCCTGAATGATAGAGTTCTAATCAAGGTTGCTGAGGCCGAGGAAAAGACTGCTGGAGGCTTGCTGCTAACAGAGGCAAGCAAGGAAAAACCTTCCATTGGCACGGTGGTGGCAGTCGGGCCTGGTCCTTTGGATGAGGATGGTAAGAGGAAACCACTGTCTGTGAGCCCAGGAAATACAGTTCTATATTCCAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTTCTGACTACATAGCTCTAAAGGCATCAGATATTATGGCTGTGCTTTCTTAG 756 47.22 MATAPTISTRSLPSFEGLRPSTVRISSMGLPLKAGGLTQRSFRSLVVRAATVVTPKYTSLKPLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVKTGAQVVYSKYAGTEVEFNGSNHLILKEDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVVAVGPGPLDEDGKRKPLSVSPGNTVLYSKYAGNDFKGSDGSDYIALKASDIMAVLS* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 640388 643140 - Vvi11g41 Vvi11g41 771482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g41 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vvi11g41 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vvi11g41 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 5 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Vvi11g41 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Vvi11g41 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vvi11g41 251 PANTHER GROES CHAPERONIN 5 251 - -
Vvi11g41 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Vvi11g41 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vvi11g41 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g41 K04078 - vvi:100232962 485.723