Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g418 ATGAAGAGCATAGGCGAGCTCAAAAATCTTGTTGGGCTCAGCCCAGGACTTTCAAGCTTTTGGGTCGAAGACGACCTCGTTTCGAGTCTTTCTTTTATCTCACCCGACGCCTGTGAAAAGTTGAGAGATTTTCCTTACGGTTTCTGTTCAAATTTCAGGGTTTTGATATTTGACTCGTCTAGGGTTTGGAATGTTATACTTTTCTTTTGGAAGCAGGCTTCGTCAATGAAAGGAGAAGTACAGCTAGAACCATCAGGTGAGCGAAACCCTAGGGACTCTGATCCTCTGCTTGAGAACCAGGCGGATTCATCCACAGGAAGTTCAAGCGAGATAAATAGTGAGGACATTGAAGCTGGCTCTGTACCCTGTTGTCGCATTTGTCTCGAGTGCGATGGAGAACCAGATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGGAAGGATTTGCTTTCTCACATTGCACAACTTGCAAGGCGCAGTACCATCTTCAAGTTGCATTATTCGAAGACAACTCTTGGCGTAAGATAAAGTTCAGACTTTTTGTGGCCAGAGATGTTTTCCTTGTATTTTTGGCTGTACAAACTGTCATCGGTGCTATGGGTGGATTTGCATACATCATGGACAAAGATGGGGCTTTCAGGAATTCGTTCAGTGATGGTTGGGATCGAATATTGTCCAGGCATCCTATACCATTCTACTACTGTATAGCAGCATATTTCCATTCGAGACAGTCGGGGGGAAGACATTGTTCTGGCATAAACAAAAGAGACAAGGAGGTATGCAAATGCAAATGTCAATGGGACTGGGATACCTGCCAGGCTAGAAAGCCAAGCCTAAGGAAATCAAGTTATAGTTCTTGGCCTTTTTTCTCTCTCTCTTTGGTTTGGGTACTGGCCTTCTTTGTTTTGCTGGGGTTTTTTGGTCTCATATTGCATTGCTCCTCCTTAAATAGCAATGATCCTCATATGGCGGGCTGCCAGAACTGCTGCTATGGATGGGGCATCTTGGATTGTTTTCCAGCATCTATGGAAGCATGCTTCGCACTTGTCATAGTTTTTGTTGTCATCTTTGCCATTCTGGGAGTTGCCTATGGTTTCCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCACATACTAACCAAAAGGGAGCTCACGAAGGAGTACATTGTGGAGGATCTCCGGGGCTGTTATACGCCACCAAAACTGGATCCAGAACATGAAGAACGTCTGAAAATGCTTAAACTTTTGTAG 1317 44.57 MKSIGELKNLVGLSPGLSSFWVEDDLVSSLSFISPDACEKLRDFPYGFCSNFRVLIFDSSRVWNVILFFWKQASSMKGEVQLEPSGERNPRDSDPLLENQADSSTGSSSEINSEDIEAGSVPCCRICLECDGEPDDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLQVALFEDNSWRKIKFRLFVARDVFLVFLAVQTVIGAMGGFAYIMDKDGAFRNSFSDGWDRILSRHPIPFYYCIAAYFHSRQSGGRHCSGINKRDKEVCKCKCQWDWDTCQARKPSLRKSSYSSWPFFSLSLVWVLAFFVLLGFFGLILHCSSLNSNDPHMAGCQNCCYGWGILDCFPASMEACFALVIVFVVIFAILGVAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYTPPKLDPEHEERLKMLKLL* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4024219 4033675 + Vvi11g418 Vvi11g418 771859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g418 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Vvi11g418 438 SUPERFAMILY RING/U-box 121 179 - -
Vvi11g418 438 Pfam RING-variant domain 124 174 IPR011016 GO:0008270
Vvi11g418 438 SMART ringv_2 123 175 IPR011016 GO:0008270
Vvi11g418 438 ProSiteProfiles Zinc finger RING-CH-type profile. 116 181 IPR011016 GO:0008270
Vvi11g418 438 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 303 438 - -
Vvi11g418 438 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 76 286 - -
Vvi11g418 438 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 303 438 - -
Vvi11g418 438 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 76 286 - -
Vvi11g418 438 CDD RING_CH-C4HC3_MARCH 124 175 - -
Vvi11g418 438 MobiDBLite consensus disorder prediction 80 114 - -
Vvi11g418 438 MobiDBLite consensus disorder prediction 96 114 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g418 - - vvi:100254401 385.571