Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g42 ATGTCTATTTCAGAGGTTTTCGAAATTGAGTCACATGGAAGTGAAGACGCACCAACACGCCTGTTGGGTGTTGACCCACCTCATCATATAAATACGAGCCGTCACTCCCAAACTCAGCAAAACTACACTCAGATACTCGAACAAAATCCGATTTGCTCGAAAGAGATATTGGGGACTTGCCAAAATCGGAACCTGAGGATAAGGACAAGGACAGAAATGGTGAAGAAGGCGATCGGAGTAGGATCAGCCCCGGCGGAGAGCAGCGATTGCAGGTACAAGGGAGTGAGGAAGCGGAAGTGGGGGAAGTGGGTGTCGGAGATTAGGCTTCCCAACAGCCGCGAGCGGATCTGGTTGGGGTCCTACGACACGGCGGAGAAGGCCGCAAGGGCCTTCGACGCCGCTCTCTACTGCCTCCGTGGCCGCACAGCGAAGTTCAACTTTCCGGAGAATCCGCCGAAGATCGCCGGCGGAGGATCCCTCACTAGGTCGGAGATTCGAGCGGCAGCCGCCAAATTCGCAAATGAGGACTCTTCCACTGCCTCGACCAGCCACTCCATCAGAATTCATTATTTTCAACCATTCGTTTTCCCGGAAATATTTTTGATTCCGGGAAAGGGATCGGATTCGATGGCTAGTTTTAGTACAGCCTCTACTTGCCTTGGTATATTCTTTCCCGTGTCACCTTCCATTCAATTGTTATCAGAAAATATGAGAGCCGCGGATTTTGTGATTTTCTCTTCTTTAATGCAAACATATTAG 759 50.33 MSISEVFEIESHGSEDAPTRLLGVDPPHHINTSRHSQTQQNYTQILEQNPICSKEILGTCQNRNLRIRTRTEMVKKAIGVGSAPAESSDCRYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTAEKAARAFDAALYCLRGRTAKFNFPENPPKIAGGGSLTRSEIRAAAAKFANEDSSTASTSHSIRIHYFQPFVFPEIFLIPGKGSDSMASFSTASTCLGIFFPVSPSIQLLSENMRAADFVIFSSLMQTY* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 646507 647791 + Vvi11g42 Vvi11g42 771483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g42 252 MobiDBLite consensus disorder prediction 8 39 - -
Vvi11g42 252 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Vvi11g42 252 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Vvi11g42 252 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Vvi11g42 252 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Vvi11g42 252 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Vvi11g42 252 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
Vvi11g42 252 Gene3D AP2/ERF domain 90 149 IPR036955 GO:0003700|GO:0006355
Vvi11g42 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 82 182 - -
Vvi11g42 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 82 182 - -
Vvi11g42 252 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g185 Vvi11g42 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13731 PF00847 AP2 1.90E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g42 - - vvi:100247370 230.72