Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g420 ATGGTGGATGTGTGTATGAGCAGAGGTTTCGGGGTTTCTGTGTGTGGCCAACCTGAGATTGAGCAGCTATCAAGAGATGGTAGCCACTACAGTCTCTCCACTGGGATTCTTCCATCTCTTGGAGCCAGAAGTAACCGCAGAGTCAAGCTCAGGAACTTCATCTTATCACCTTATGATCGTCGTTACAGGACATGGGAGACTTTTCTGGTTCTTCTGGTCTTCTATACTGCTTGGGTGTCCCCGTTCGAATTTGGATTCCTTAAGAAACCAGAGGCACCGCTCTCCATTACTGATAATGTTGTCAATGGTTTCTTTGCTGTGGATATCGTTCTTACCTTCTTTGTAGCTTATCTGGATAAAACTACCTACCTCCTTGTCGACAATCCAAAGCAAATTGCTTGGAAGTATACAAGTACCTGGCTGGCCTTTGATGTCATATCCACAATCCCTTCTGAACTGGCTAGAAAAATTACCCCCTCTCCTTTCCAGTCATATGGCTTTTTCAACATGCTTCGCCTCTGGCGCCTTCGGAGAGTTAGTTCCCTGTTTGCTAGATTGGAGAAAGATAGGAACTTTAATTACTTTTGGGTTCGATGCGCAAAACTTATTTGTGTCACCGTTTTTGCAGTTCATTGTGCTGCATGCTTTTATTATCTTCTTGCCGCACGTTATCATGACCCACAAAAGACATGGATTGGAGCCTCCATGAATAACTTCCTTGAACAAAGCCTGTGGATCCGTTATGTGACAGCGATTTACTGGTCTATCACTACTCTCACAACTGTTGGCTATGGTGATTTGCATCCTGAAAATACAAGGGAGATGATCTTTGACATCTTCTACATGCTCTTCAACCTTGGGTTGACAGCATATCTGATTGGGAATATGACCAACTTGGTCGTTCATGGGACAAGTCGAACTAGAAGATTTAGGGATACCATTCAAGCCGCCTCAAGTTTTGCACAGAGGAACCAACTGCCCGTTCGGCTGCAAGATCAAATGCTTGCACACTTATGTTTGAAGTTCAGAACAGACTCAGAGGGACTTCAGCAGCAAGAGACTCTTGATTCCCTTCCAAAGGCCATTCGGTCAAGCATTTCACATTTTCTTTTCTACTCTCTCTTGGACAAGGTTTACTTATTTCGTGGGGTATCCAATGACTTGCTTTTTCAGCTGGTGTCGGAGATGAAAGCTGAGTATTTTCCTCCCAAGGAAGATCTGATCTTGCAAAATGAAGCACCCACAGATTTCTATATAGTCGTTTCAGGCGCTTTGGATCTTCTGGTTCTCAAAAATGGCACTGAACAGGCAATTGGAGAGGCAAAAACTGGAGACCTTTGTGGTGAGATTGGGGTTCTTTGTTATAGGCCACAGCTCTTTACGGTGCGGACGAAGCGATTGTGCCAGCTGCTTCGGCTGAACCGTACTACATTCTTGAATATCGTTCAGGCCAATGTTGGAGACGGGACAATAATAATGAATAATCTCCTTCAGCATTTGAAAGACCTAAAGGACCCAATCATGGAGGGAGTTTTGGTAGAGACAGAGAACATGCTAGCTCGTGGTAGAATGGACCTACCTCTCAGTTTGTGCTTTGCAACACTAAGAGGAGATGACCTTTTGTTGCATCAGTTGTTGAAACGTGGTCTGGATCCAAATGAATCCGACAGCAATGGGAGGACAGCTCTGCACATAGCAGCTTCTAAAGGAAGTGAAAGCTGTGTACTTCTTCTACTAGATTATGGGGCAGGGCCAAACAATAGAGACTCGGAGGGAGTGGTACCACTATGGGAAGCAATGGTGGGTGGTCATGAATCTGTTATTCAACTGCTTGTGGACAATGGTGCAAACATAAATTCTGGTGACGTCGGTCACTTTGCTTGCACCGCTGCTGAGCTGAAGAACTTGAACTTGCTCAAGCAAATTGTTCACTATGGAGGGGATGTCACACAGCCTAACAACACTGGAAATACAGCTCTTCATGCTGCAGTTTGTGAGGAAAACATTGAAATGGTCAAATTCCTTTTGGACCAAGGAGCTGATATTGACAGAACAAACGACCATGGCTGGACCCCAAGAGATCTAGCTGATCAGCAAGGACACGAAGATATAAAAGCTCTGTTTGAATCTTGCAAAGAGCACAAAAGTCAATCTACCATTGGTATTTCAGAAGAGCGGCATGGAATTCGCTTCCTTGGAAAATTTAAAAGTGATCCTTCCATCTTTCCACTCCCACAAGGAGGCTCCTCCCCAGCAGCAGATGGATCATGGGGGCATAACCGACCGAGACGTAGAACTAACAAGTTCCACAACTCACTATTTGGGATCATGTCAGCTGCCCACACTGGGGAGAGAGACATGTTACTGTCCGTAAATGTTACTAAATCTGCCAGAAGTGGGGAAGGTTACCCTGCTAGAGTGAGAATAAGCTGTCCAGAAAAGGGAGATAGAGCAGGGAAGCTCATGCTACTTCCAGAGAGCTTTCAAGAGCTACTTGAGATTGGAGCCAAAAAATTCGGTATCTCCCATGCAAAAGTTCAGACCGAAGATGGAGCTGAAATTGATGCTATAGAGTTGATTAGAGATGGAGACCATCTTGTTTTTGTTAGTGATGGTTGA 2619 44.75 MVDVCMSRGFGVSVCGQPEIEQLSRDGSHYSLSTGILPSLGARSNRRVKLRNFILSPYDRRYRTWETFLVLLVFYTAWVSPFEFGFLKKPEAPLSITDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDNPKQIAWKYTSTWLAFDVISTIPSELARKITPSPFQSYGFFNMLRLWRLRRVSSLFARLEKDRNFNYFWVRCAKLICVTVFAVHCAACFYYLLAARYHDPQKTWIGASMNNFLEQSLWIRYVTAIYWSITTLTTVGYGDLHPENTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRRFRDTIQAASSFAQRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHFLFYSLLDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDLILQNEAPTDFYIVVSGALDLLVLKNGTEQAIGEAKTGDLCGEIGVLCYRPQLFTVRTKRLCQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLVETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDSNGRTALHIAASKGSESCVLLLLDYGAGPNNRDSEGVVPLWEAMVGGHESVIQLLVDNGANINSGDVGHFACTAAELKNLNLLKQIVHYGGDVTQPNNTGNTALHAAVCEENIEMVKFLLDQGADIDRTNDHGWTPRDLADQQGHEDIKALFESCKEHKSQSTIGISEERHGIRFLGKFKSDPSIFPLPQGGSSPAADGSWGHNRPRRRTNKFHNSLFGIMSAAHTGERDMLLSVNVTKSARSGEGYPARVRISCPEKGDRAGKLMLLPESFQELLEIGAKKFGISHAKVQTEDGAEIDAIELIRDGDHLVFVSDG* 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4046146 4052218 - Vvi11g420 Vvi11g420 771861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g420 872 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi11g420 872 CDD CAP_ED 380 485 IPR000595 -
Vvi11g420 872 Gene3D Jelly Rolls 345 504 IPR014710 -
Vvi11g420 872 SUPERFAMILY Ankyrin repeat 529 710 IPR036770 -
Vvi11g420 872 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Vvi11g420 872 Pfam Ankyrin repeats (3 copies) 630 710 IPR002110 GO:0005515
Vvi11g420 872 Pfam Ankyrin repeats (3 copies) 530 621 IPR002110 GO:0005515
Vvi11g420 872 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Vvi11g420 872 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Vvi11g420 872 ProSiteProfiles Ankyrin repeat region circular profile. 655 687 - -
Vvi11g420 872 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Vvi11g420 872 SMART ANK_2a 591 620 IPR002110 GO:0005515
Vvi11g420 872 SMART ANK_2a 558 587 IPR002110 GO:0005515
Vvi11g420 872 SMART ANK_2a 655 684 IPR002110 GO:0005515
Vvi11g420 872 SMART ANK_2a 525 554 IPR002110 GO:0005515
Vvi11g420 872 ProSiteProfiles KHA domain profile. 806 872 IPR021789 -
Vvi11g420 872 ProSiteProfiles Ankyrin repeat region circular profile. 591 622 - -
Vvi11g420 872 PANTHER K+ TRANSPORTER 1-RELATED 6 871 - -
Vvi11g420 872 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Vvi11g420 872 Gene3D - 526 710 IPR036770 -
Vvi11g420 872 PANTHER POTASSIUM CHANNEL AKT1 6 871 IPR045319 GO:0005249|GO:0006813
Vvi11g420 872 Pfam Cyclic nucleotide-binding domain 400 484 IPR000595 -
Vvi11g420 872 PRINTS Ankyrin repeat signature 559 574 IPR002110 GO:0005515
Vvi11g420 872 PRINTS Ankyrin repeat signature 607 621 IPR002110 GO:0005515
Vvi11g420 872 ProSiteProfiles Ankyrin repeat region circular profile. 558 589 - -
Vvi11g420 872 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Vvi11g420 872 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Vvi11g420 872 SMART cnmp_10 380 497 IPR000595 -
Vvi11g420 872 Gene3D - 63 301 - -
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g420 872 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g436 Vvi11g420 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g420 K21867 - vvi:100266175 1746.87