Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g428 ATGGAAGACAAGAAAGCAAGCATAATTGCCGTCTCATCGGTCGTTGCCCTCATCATCTTGATCATAGTTGCTCGCGTCTCTCTGAAACTTTCCAATACTTTCTTCCTCATTCTTGGTGCTGACATTGCTGCCATACTTGCTATCTTCACATATGTTATAATCAGATGGCGTTTTAATCGTCGAAGGAAATTGTTAGAGACACGACTCGTTTCAGAGGGCCGAGAGCTTCGAATCGAGTATAGTTTCCTTAGAAAAGTTGCAGGGGTTCCAACAAAGTTTAGATACAAGGAGCTTGAGGAAGCAACAGACAACTTCCAGGCATTGATAGGCCGCGGAGCATCTGCTTCTGTTTTCAGAGGAATCCTGAATGATGGCACTTCTGTTGCTGTGAAAAGAATTGAAGGAGAGGAGCATGGGGAGAAGGAATTCAAATCTGAAGTTGCAGCAATTGCCAGCGTGCAACATGTAAATCTTGTCCGCCTTCTCGGATATTGTTGTGTTCCTGGAGGGCCTCGTTTTCTTATTTATGATTTCATCCAAAATGGATCATTGGATTGCTGGATTTTCCCTCAGAGGGAAAGTCAAGGCCGGCCCAGGGGCTGCTTGTCATGGGACTTTAGATATAGAGTTGCCCTCGATGTTGCGAAGGCCCTTTCTTATCTTCATCATGATTGCAGGTCCCGGGTCTTACACCTTGATGTCAAGCCAGAAAACATACTTCTTGATGAGAATTATAGAGCACTTGTATCAGATTTTGGACTGTCAAAGTTAATGAGGAAAGATGAAAGCCGAGTTCTTACGACAATCAGAGGGACTAGAGGTTACTTGGCTCCAGAGTGGCTATTGGAGCATGGAGTTTCTGAGAAATCTGATATCTACAGTTATGGGATGGTACTCTTTGAGATGCTTGGAGGCCAGAGGAATGTTTGCTTGATCGAAAACGGCAACGACAGGTCTCAAAGGAAATGGCAATATTTTCCAAAAGTGGTGACTGAGAAAATGAGAGAAGGGAAGCTTATGGAGGTTGTTGACCATAGGTTAGTAGAAGGAGGAGGTATCGATGAGAGGGAGGTTAAGAGATTGGTTTATGTAGCTTTATGGTGCATACAAGAGAAGGCCAGGCTTAGACCAACCATGGCCCGTGTGGTTGAGATGCTTGAAGGCCATGTGACAGTGGACGAGCCCCCTGAGACTCAAATGATCATTGTTGACCTATTATGCACTGATGAAGAACCAGCTAATGCCTGTAACAGGCCAAGGATGGCTGCATTGGTAACACCCCAAGTAGACAATGCTACTCTTCCTTCCACTTCCACCTACTCATATGCCTTGTCCGTTCTATCAGGCCGGTAA 1353 45.08 MEDKKASIIAVSSVVALIILIIVARVSLKLSNTFFLILGADIAAILAIFTYVIIRWRFNRRRKLLETRLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDNFQALIGRGASASVFRGILNDGTSVAVKRIEGEEHGEKEFKSEVAAIASVQHVNLVRLLGYCCVPGGPRFLIYDFIQNGSLDCWIFPQRESQGRPRGCLSWDFRYRVALDVAKALSYLHHDCRSRVLHLDVKPENILLDENYRALVSDFGLSKLMRKDESRVLTTIRGTRGYLAPEWLLEHGVSEKSDIYSYGMVLFEMLGGQRNVCLIENGNDRSQRKWQYFPKVVTEKMREGKLMEVVDHRLVEGGGIDEREVKRLVYVALWCIQEKARLRPTMARVVEMLEGHVTVDEPPETQMIIVDLLCTDEEPANACNRPRMAALVTPQVDNATLPSTSTYSYALSVLSGR* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4152757 4154110 + Vvi11g428 Vvi11g428 771869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g428 450 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g428 450 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Vvi11g428 450 Pfam Protein kinase domain 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g428 450 Gene3D Transferase(Phosphotransferase) domain 1 179 401 - -
Vvi11g428 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vvi11g428 450 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 450 - -
Vvi11g428 450 Gene3D Phosphorylase Kinase; domain 1 71 178 - -
Vvi11g428 450 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g428 450 PANTHER RECEPTOR-LIKE KINASE 1 450 - -
Vvi11g428 450 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76050 PF00069 Pkinase 6.90E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g428 - - vvi:104880655 862.833