Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g434 ATGGCCACCGTAACCAGAGACGATTCCGACTACGACAGCAGCTGTTCTTCAATCACGGTGCCCGACTCCAGCCGGAGCTGGATGAGCAACCTCAGCTTTGGCAGCCGGAGCTCCGTCTCCGTCTGTTCCTCCGCTGACACCTCCCACAAGCCTCACAAGGCAAACCAAGCCGCCTGGGAAGCCATGAAGCGGCTCCGGGGCGAGAAAGGGCGAGTGGGGCTGGACCACTTCCGGATGCTCCGGCGGCTGGGAAGTGGGGATATCGGTAATGTTTATTTATGCCAGATTCGGAACCCGGTGGTGGGGTTGCCGCAGAGCTTTTACGCGATGAAGGTGGTGGATAGGGAGGCTCTTGCTATAAGGAACAAGTTGCAGAGGGCTGAGATGGAGAAGGAGATACTGGGTATTCTTGATCACCCCTTTTTGCCTACTCTCTACGCTGAGTTTGATGCTTCGCACTACTCCTGCTTGGTTATGGAGTTCTGTCCTGGTGGAGACTTACACGCTGCTCGGCAGCGACAGCCCGGAAAGCGGTTTAGCATTTCTTCAGCAAAGTTTTATGCTGCAGAGACTCTGGTGGCTCTGGAGTATCTCCACATGATGGGTGTTGTTTACAGAGACCTCAAGCCCGAAAATGTGCTCGTCAGAGAGGACGGCCACATCATGCTTTCGGACTTCGATCTTTCCCTCAAATGCGACAAAGGTTCAGTCAGAACAATATCCTTCGTAGGCACCCACGAGTACTTAGCCCCGGAAGTGATCTCAGGACAAGGCCATGGAAGTGCAGTGGACTGGTGGACTCTCGGGGTGTTCTTATACGAGCTTCTCTACGGAAGAACACCCTTCAAAGGTGAAAACAACGAAAAAACCCTCATCAACATTTTGAAACAGCCCTTAACCTTCCCAAGAATTGGACTTCTGGTCAAGAATCCCAAGAAAAGAATCGGAAGCTTGAAGGGCTCCGTAGAGATCAAGAGGCACGAGTTCTTCAAGGGTGTGAACTGGGCATTGATCAGGTCAGTGAAACCACCAGAGGTCCCCAGAGACCATCTCCAGAAGATCATAAGGAGTAGAGCTTCCTTACCAAAGCTCAGCAAGAAAGAAAGAGACGCACCATATCAGATCCCTCATCATTTTGACTACTTCTAA 1149 51.87 MATVTRDDSDYDSSCSSITVPDSSRSWMSNLSFGSRSSVSVCSSADTSHKPHKANQAAWEAMKRLRGEKGRVGLDHFRMLRRLGSGDIGNVYLCQIRNPVVGLPQSFYAMKVVDREALAIRNKLQRAEMEKEILGILDHPFLPTLYAEFDASHYSCLVMEFCPGGDLHAARQRQPGKRFSISSAKFYAAETLVALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLKCDKGSVRTISFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYELLYGRTPFKGENNEKTLINILKQPLTFPRIGLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVKPPEVPRDHLQKIIRSRASLPKLSKKERDAPYQIPHHFDYF* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4223683 4225253 + Vvi11g434 Vvi11g434 771875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g434 382 Gene3D Transferase(Phosphotransferase) domain 1 166 348 - -
Vvi11g434 382 SMART serkin_6 77 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g434 382 Gene3D Phosphorylase Kinase; domain 1 74 165 - -
Vvi11g434 382 Pfam Protein kinase domain 78 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g434 382 PANTHER PROTEIN KINASE PINOID 2 1 233 - -
Vvi11g434 382 PANTHER PROTEIN KINASE PINOID 2 237 382 - -
Vvi11g434 382 Coils Coil 110 130 - -
Vvi11g434 382 MobiDBLite consensus disorder prediction 1 24 - -
Vvi11g434 382 PANTHER FLIPPASE KINASE 1-RELATED 237 382 - -
Vvi11g434 382 PANTHER FLIPPASE KINASE 1-RELATED 1 233 - -
Vvi11g434 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vvi11g434 382 ProSiteProfiles Protein kinase domain profile. 77 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g434 382 SUPERFAMILY Protein kinase-like (PK-like) 62 351 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76052 PF00069 Pkinase 7.60E-54 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g434 K08286 - vvi:100242344 704.901