Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g45 ATGCAGCAGCAGAGACTGAAACAGCAGCAACAAGCCTTGATACAGCAATCGCTTCTTCAGCAGCAGTCTCTGTACCACCACCCTGGTCTCTTGGCTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCTATTGTGACTCTGAATGGAAGGCATCTGTTTGGTCAGCCAATCAAAGTTAATTGGGCATATGCTAGTAGTCAGAGAGAGGATACATCAGGTCATTACAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACAGATGCTACACTGTTTGCATGTTTCTCTGTTTATCCTAGCTGTTCAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGGAAGCCCAAAGTGCAATTAATGACTTAAATGGAAGGTGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGTGCTGGAGGTAACGAGGACAAGCCAAATTCAGATGCCAAAAGTGTTGTGGAACTAACTAATGGAACATCTGAAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTATTGAAGATGTTCGGGTGCAACGAGATAAAGGCTTTGGTTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCTCGGATTCTCTGTGGCAAACCAATTAAGAAAGGTTGCCCAAGATTGAGGCAAAAAACAACTCCATCTTTGTACATGGTGCTCATGGGGCAGCAAACCTACTCCAGCAGGGACAAGCTCCACCCCTCTTCCCCCACCAGCTGCTCCACATATGCCTGGTATTTCAGCTGCTGA 1128 46.1 MQQQRLKQQQQALIQQSLLQQQSLYHHPGLLAPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALSIVTLNGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLNGRWLGSRQIRCNWATKGAGGNEDKPNSDAKSVVELTNGTSEDGKDKSNDEAPENNLQYTTVYVGNLAPEVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKKGCPRLRQKTTPSLYMVLMGQQTYSSRDKLHPSSPTSCSTYAWYFSC* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 668976 676542 - Vvi11g45 Vvi11g45 771486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g45 375 Gene3D - 235 338 IPR012677 -
Vvi11g45 375 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 329 - -
Vvi11g45 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 328 IPR000504 GO:0003723
Vvi11g45 375 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 9 329 - -
Vvi11g45 375 CDD RRM1_TIA1_like 56 126 - -
Vvi11g45 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Vvi11g45 375 CDD RRM3_TIA1_like 260 328 - -
Vvi11g45 375 Gene3D - 138 218 IPR012677 -
Vvi11g45 375 SMART rrm1_1 261 330 IPR000504 GO:0003723
Vvi11g45 375 SMART rrm1_1 140 213 IPR000504 GO:0003723
Vvi11g45 375 SMART rrm1_1 55 124 IPR000504 GO:0003723
Vvi11g45 375 SMART rrm2_1 140 213 IPR003954 GO:0003676
Vvi11g45 375 Gene3D - 1 137 IPR012677 -
Vvi11g45 375 SUPERFAMILY RNA-binding domain, RBD 53 215 IPR035979 GO:0003676
Vvi11g45 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 328 IPR000504 GO:0003723
Vvi11g45 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Vvi11g45 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Vvi11g45 375 SUPERFAMILY RNA-binding domain, RBD 246 328 IPR035979 GO:0003676
Vvi11g45 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Vvi11g45 375 CDD RRM2_PUB1 140 214 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g64 Vvi11g45 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g45 K13201 - vvi:100259344 640.958