Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g472 ATGATGGTGGATTTCGCCCGCCTCTATATCTTGTTGGATGCGCTGGGTTCGCGTACTTCTCTGTCCTCTGTGGTTCAAATTAATCTCAGTTTCTCTCCCTCAAACATGGTACAATCCAAGAAGTTCAGAGGAGTCAGGCAGCGCCACTGGGGCTCATGGGTATCTGAAATACGCCACCCGTTGTTGAAGAGAAGGGTGTGGCTGGGCACATTTGAAACAGCAGAGGAAGCAGCTCGGGCTTATGATCAGGCCGCCGTTTTAATGAGTGGCCGGAATGCAAAAACCAACTTCCCAGTAGCCCAAACTCCTACTCCAGAAAACACTAGTACTTACCAGGACCCCCATTCATCAACCAAGGCCTTATCGGAAATCCTACAAGCCAAGCTCCGGAAAAGCAGCAAGGTGCCTTCTCCATCACTGACATGCCTGAAGCTGGACCCCGAGAATTCCCACATAGGGGTGTGGCAGAAGAGCGCAGGGCAGTGCTCCAATTCGAATTGGGTTATGATAGTTGAGCCAGGGGAGAAGAAGAAAGGCCATACTTCAGAGGGTGCATCGCCATTATCAAAATCAAGTTCTCCATTGCCAGGGCCTGAATTCGGAAGCGGGATGGAAATCGAAGAAGACAGAATTGCACTGCAAATGGTTGAGGAGCTTCTTGACGAGAATTGCCCTAGCCCTATACTTGAGATTCAAGATGGTGAAGGTACCCAAATGTAG 720 49.86 MMVDFARLYILLDALGSRTSLSSVVQINLSFSPSNMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPVAQTPTPENTSTYQDPHSSTKALSEILQAKLRKSSKVPSPSLTCLKLDPENSHIGVWQKSAGQCSNSNWVMIVEPGEKKKGHTSEGASPLSKSSSPLPGPEFGSGMEIEEDRIALQMVEELLDENCPSPILEIQDGEGTQM* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4677757 4681200 - Vvi11g472 Vvi11g472 771913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g472 239 MobiDBLite consensus disorder prediction 97 116 - -
Vvi11g472 239 Pfam AP2 domain 41 85 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 MobiDBLite consensus disorder prediction 176 203 - -
Vvi11g472 239 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Vvi11g472 239 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 36 230 - -
Vvi11g472 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 230 - -
Vvi11g472 239 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vvi11g472 239 Gene3D AP2/ERF domain 40 100 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g478 Vvi11g472 ECH
Vvi9g706 Vvi11g472 ECH
Vvi9g536 Vvi11g472 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13735 PF00847 AP2 3.40E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g472 - - vvi:100266250 459.914