Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g474 ATGATGGAGCAGAGTTTGGTGCACGGGACGCTTCATGCAACCATCTATGAGGTTGATGGGCTTTCCACCGGAGGTCCCTGGAATTTCATTCAGAAGGTATACACCACCCTAAGCAAACGCATCGTGGGGGCGCCTATTTCCAAGATATATGTGACAATTGATTTGGAAAAAGCTGGAGTTGGTCGAACCAGCAAGTTAGACAATGAAGACTCAAATCCCCGATGGTACCAAAGTTTCCACATTTACTGTGCCCACAAGGCTTCTCATGTTGTATTCTCTGTCAAACAAGATAATCCTATTGGGGCAACTGTTATTGGACGAGCTCACTTACCAGTTGGGGAACTCCTGGAAGGAGAAGTGGATAGATGGCTTGAGCTCTTCCATCATGATCACACTCCCATCAATGGAGGTTCTAAGTTACATGTCAAACTACAATTTGTTGATGTTACTCGAGAATTTAACTGGTCTCGAGGGATTAGGAGCCCAAAATTTCCAGGAGTTCCTTACACATTCTTTCCTCAGAGAAAAGGCTGCAGATGTTATGAGCCGCACCAGTGCTGGGAAGATATCTTTCATGCCATTTCTAATGCAAAACACTTAGTTTACATAACAGGCTGGTCTCTGTATACTAAAACTACCTTGCTTTTTAGGAAGAAGACCTTAACCCTGGGAGAGCTTCTGAAGAAGAAGGCCAGTGAAGGTGTAACGGTCCTAATGCTTCTTTGGGAGGACAGGACTTCTGTTAAGTTACTAAAGAAGGACGGGTTGATGGCCACCCATGGTGAAGACACCGGGAAATATTTCCATGGCACTGGAGTCCATTGTGTCTTATGCCCCCGCAATCCTGACAATGGACTTAGCATTGTTCAGGACATAGAGATATCTGCCATGTTCACTCATCATCAGAAGATTGTGGTGGTGGACAGTGAGATGCCTAATGGAGGATCAGAACATAGGAGAATTGTGAGTTTCATTGGTGGCTTTGATCTTTGTGATGGGAGGTATGATACTCCCACGCATTCCATTTTCAGGACTCTAGACACAGTTCACCATAATGATTTTCGTCAGGCCAATTTTCCCAATGCCTCAATTAGTAAAGGTGGACCAAGAGAGCCCTGGCATGATATTCACTGTCGGTTAGAAGGAGCAATTGCATGGGATGTCTTGTTCAATTTCGAGCAGAGGTGGAGGAAACAAGGTGGGAAGGATCTGCTTGTTCAACTGAGAGAACTTGATGACATAATCATACCTCCATCTCCAGTCATGTTCCCCGAAGACCATGAAACATGGAATGTTCAATTGGCAGGGCTTATCTGTGGGAATGACCATATCATTGACCGGAGCATTCAGGATGCTTACATCAATGCCATCCGACGAGCAAAAAATTTCATCTACATTGAAAACCAGTATTTTCTTGGAAGTTCCTTCGGCTGGAACTTGGATGGCCTCAAAGTAGAGGACATTGGCGCTTTGCATCTCATACCAAAGGAGCTGTCGCTAAAGATTGTCAGTAAGATTGAAGCAGGGGAGAGGTTTTCCGTATATGTTGTGATTCCAATGTGGCCAGAGGGTGTCCCAGAGAGTTCATGTGCTCAGAGTCCAGACCATGACACAAATTATCACAGAGCTCAACAATCCAGGCGGTTCATGATCTATGTCCACGCTAAGATGATGATCGTTGACGATGAATACATAATCACAGGATCCGCCAACATAAATCAGAGGTCAATGGATGGTGCCAGGGATTCAGAGATTGCAATGGGAGCCTACCAACCATATCACCTAGCTTCCAAGCAGCCTGCCAGGGGTCATATTCATGGCTTCCGAATGGCATTATGGTACGAGCACCTTGGCCTGCTTGACAACTCCTTCCTCCAACCAGAGAGCCTGGACTGTATCCAAAAGGTGAACCAGATGGCTGAGAGGAATTGGAACCTCTATACCTCTGAGAGAATGGATCATGACCTGCCAGGACACCTGCTTAGCTACCCCATTTGTGTTACGGATAGTGGAGAGGTGACAGAATTGCCTGGATCAGAGTTCTTCCCTGACACCAAGGCTCCAGTTCTGGGGTCCAAATCTGAGTACATTCCTCCAATGCTCACTACTTGA 2112 45.88 MMEQSLVHGTLHATIYEVDGLSTGGPWNFIQKVYTTLSKRIVGAPISKIYVTIDLEKAGVGRTSKLDNEDSNPRWYQSFHIYCAHKASHVVFSVKQDNPIGATVIGRAHLPVGELLEGEVDRWLELFHHDHTPINGGSKLHVKLQFVDVTREFNWSRGIRSPKFPGVPYTFFPQRKGCRCYEPHQCWEDIFHAISNAKHLVYITGWSLYTKTTLLFRKKTLTLGELLKKKASEGVTVLMLLWEDRTSVKLLKKDGLMATHGEDTGKYFHGTGVHCVLCPRNPDNGLSIVQDIEISAMFTHHQKIVVVDSEMPNGGSEHRRIVSFIGGFDLCDGRYDTPTHSIFRTLDTVHHNDFRQANFPNASISKGGPREPWHDIHCRLEGAIAWDVLFNFEQRWRKQGGKDLLVQLRELDDIIIPPSPVMFPEDHETWNVQLAGLICGNDHIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFGWNLDGLKVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGVPESSCAQSPDHDTNYHRAQQSRRFMIYVHAKMMIVDDEYIITGSANINQRSMDGARDSEIAMGAYQPYHLASKQPARGHIHGFRMALWYEHLGLLDNSFLQPESLDCIQKVNQMAERNWNLYTSERMDHDLPGHLLSYPICVTDSGEVTELPGSEFFPDTKAPVLGSKSEYIPPMLTT* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4696540 4699271 + Vvi11g474 Vvi11g474 771915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g474 703 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 334 IPR001736 GO:0003824
Vvi11g474 703 Gene3D C2 domain 7 154 IPR035892 -
Vvi11g474 703 PANTHER PHOSPHOLIPASE D 4 532 IPR015679 -
Vvi11g474 703 Gene3D Endonuclease Chain A 444 594 - -
Vvi11g474 703 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Vvi11g474 703 SUPERFAMILY Phospholipase D/nuclease 432 633 - -
Vvi11g474 703 PIRSF PLD_plant 179 436 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi11g474 703 PIRSF PLD_plant 527 703 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi11g474 703 PIRSF PLD_plant 434 533 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi11g474 703 PIRSF PLD_plant 1 180 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi11g474 703 PANTHER PHOSPHOLIPASE D 532 703 IPR015679 -
Vvi11g474 703 SMART pld_4 549 576 IPR001736 GO:0003824
Vvi11g474 703 SMART pld_4 296 334 IPR001736 GO:0003824
Vvi11g474 703 PANTHER PHOSPHOLIPASE D 4 532 - -
Vvi11g474 703 PANTHER PHOSPHOLIPASE D 532 703 - -
Vvi11g474 703 Pfam PLD-like domain 454 585 IPR025202 -
Vvi11g474 703 Pfam Phospholipase D Active site motif 297 334 IPR001736 GO:0003824
Vvi11g474 703 Gene3D Endonuclease Chain A 172 411 - -
Vvi11g474 703 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 148 IPR035892 -
Vvi11g474 703 SMART C2_3c 10 124 IPR000008 -
Vvi11g474 703 Pfam Phospholipase D C terminal 621 693 IPR024632 -
Vvi11g474 703 SUPERFAMILY Phospholipase D/nuclease 150 413 - -
Vvi11g474 703 CDD C2_plant_PLD 6 147 - -
Vvi11g474 703 Pfam C2 domain 10 123 IPR000008 -
Vvi11g474 703 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 549 576 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g537 Vvi11g474 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g474 K01115 - vvi:100261040 1051.2