Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g475 ATGGAGCAGATTTTGCTTCATGGGACGCTTCATGGGACCATCTATGAAGTTGACAGGCTTTCCAGCGGAGGTCCCTGGAATTTCATCGACAAGCTGAAGAGACGCATTGAGAGGGCCGGTAGTTCCAAGGTATATGTAACAATCGATTTAGACAAGGCTAGAGTTGGTCGAACCAGGAAGTTAGAAAACGAGGAGACAAATCCCCATTGGAGCGAATGTTTCCATATCTACTGTGCCCACAAGGCTTCTCATGTTGTATTCTCTGTCAAACAAGAAAATCCTATTGGAGCAACTGTCATTGGAAGAGCTCAATTACCAGTCGAGGAACTCCTGGAAGGAGAAGTGGATAGATGGCTTGAGCTCTTCCATCATGATCGCACTCCCATACATGGAGGCTCTAAATTACATGTCAAACTACAATTTTTTGATGTTACTCGAGAATGTAACTGGTCTCGAGGCATTACAAGCCCAAAATTTCCAGGAGTTCCTTACACATTCTTCCCTCAGAGAAAAGGCTGCAGATATTATGAGCCGCACCGCTGCTGGGAAGATATTTTTCATGCCATTTCCAATGCTAAACAGTTGATTTACATAACAGGCTGGTCGGTGTATACTAAAATCACCTTGCTTTTTAATAAGAAGACCTCAACCCTGGGAGAGCTTCTGAAGAAGAAGGCCAGTGAAGGTGTGAGGGTTCTAATGCTTGTTTGGGATGACAGAACTTCTGTTAACATTGTTCAGGACATAGAGATATCTACCATGTTCACTCATCACCAGAAGATTGTGGTAGTGGACAGTGAGATGCCTAATCGAGGATCAGAACGTCGGAGAATTGACTCTAGACACACAATTGCATGGGATGTCTTGTTCAATTTCGAGCAAAGGTGGAGAAAACAAGGTGGGAAGGATCTGCTTGTTCAACTAAGAGAACTTGATGACATAATTATACCTCCATCTCCAGTCATGTTCCCTGAAGACCATGAAACATGGAATGTTCAACTAGCAGGGCTTATCTGTGGGAGTGACCATATCATTGACCGGAGCATTCAGGATGCTTATATCCATGCCATCCGAAAAGCCAAAAATTTCATTTACATTGAAAACCAGTATTTTCTTGGAAGCTCTTTCTGCTGGAACTCGGATGGCCTCAAAGTAGAGGACATTGGTGCTTCGCATCTCATACCAAAGGAACTGTCACTAAAGGTCGTCAGTAAGATCGAAACAGGAGAGAGATTTTCCATATATGTTGTAGTTCCAATGTGGCCAGAAGGTATCCCAGAGAAATATGAACCTCCAGAGAGTCCAGACCATGATACAGATTATTACAGAGCTCAGCAATCCAGGCGGTTCATGATCTATGTCCATGCAAAGATGATGATTGTTGATGATGAATACATAGTCATAGGATCCGCCAACATAAATCAGAGGTCAATGGATGGTGCCAGGGATTCAGAGATTGCAATGGGAGGCTACCAACCGTATCACCTCGCTACCAAGCAGCCTGCCAGGGGTCAAATTCATGGCTTCCGAATGGCATTATGGTATGAACACCTTGGCCTGGTTGATAACTCCTTCCTCCAACCAGAGAGCCTCGACTGTATCCAGAAGGTGAACAAGATTGCTGAAAGGAATTGGAACCTCTATTCCTCAGAGAGAACGGATGATGACTTGCCAGGCCACCTGCTTAGTTACCCCATTTGCGTTACGGATACTGGAGAGGTCAAAGAAGTACCTGGATCAGAGTTCTTTCCCGACACTAAGGCTCAAGTTCTGGGGTCCAAATCTGATTATCTCCCTCCAATCCTCACTACTTGA 1815 44.52 MEQILLHGTLHGTIYEVDRLSSGGPWNFIDKLKRRIERAGSSKVYVTIDLDKARVGRTRKLENEETNPHWSECFHIYCAHKASHVVFSVKQENPIGATVIGRAQLPVEELLEGEVDRWLELFHHDRTPIHGGSKLHVKLQFFDVTRECNWSRGITSPKFPGVPYTFFPQRKGCRYYEPHRCWEDIFHAISNAKQLIYITGWSVYTKITLLFNKKTSTLGELLKKKASEGVRVLMLVWDDRTSVNIVQDIEISTMFTHHQKIVVVDSEMPNRGSERRRIDSRHTIAWDVLFNFEQRWRKQGGKDLLVQLRELDDIIIPPSPVMFPEDHETWNVQLAGLICGSDHIIDRSIQDAYIHAIRKAKNFIYIENQYFLGSSFCWNSDGLKVEDIGASHLIPKELSLKVVSKIETGERFSIYVVVPMWPEGIPEKYEPPESPDHDTDYYRAQQSRRFMIYVHAKMMIVDDEYIVIGSANINQRSMDGARDSEIAMGGYQPYHLATKQPARGQIHGFRMALWYEHLGLVDNSFLQPESLDCIQKVNKIAERNWNLYSSERTDDDLPGHLLSYPICVTDTGEVKEVPGSEFFPDTKAQVLGSKSDYLPPILTT* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4701209 4707836 + Vvi11g475 Vvi11g475 771916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g475 604 SMART pld_4 450 477 IPR001736 GO:0003824
Vvi11g475 604 SMART pld_4 253 271 IPR001736 GO:0003824
Vvi11g475 604 Pfam Phospholipase D C terminal 522 594 IPR024632 -
Vvi11g475 604 Pfam C2 domain 36 118 IPR000008 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 336 428 IPR015679 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 429 604 IPR015679 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 283 334 IPR015679 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 175 245 IPR015679 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 245 279 IPR015679 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 3 174 IPR015679 -
Vvi11g475 604 Gene3D Endonuclease Chain A 344 493 - -
Vvi11g475 604 CDD C2_plant_PLD 4 142 - -
Vvi11g475 604 SUPERFAMILY Phospholipase D/nuclease 346 534 - -
Vvi11g475 604 SUPERFAMILY Phospholipase D/nuclease 145 314 - -
Vvi11g475 604 Pfam PLD-like domain 354 486 IPR025202 -
Vvi11g475 604 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 450 477 IPR001736 GO:0003824
Vvi11g475 604 SMART C2_3c 9 119 IPR000008 -
Vvi11g475 604 Gene3D C2 domain 4 142 IPR035892 -
Vvi11g475 604 ProSiteProfiles C2 domain profile. 1 119 IPR000008 -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 336 428 - -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 3 174 - -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 429 604 - -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 283 334 - -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 175 245 - -
Vvi11g475 604 PANTHER PHOSPHOLIPASE D 245 279 - -
Vvi11g475 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 143 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g538 Vvi11g475 ECH
Vvi4g479 Vvi11g475 ECH
Vvi9g537 Vvi11g475 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g475 K01115 - vvi:100259366 1133.24