Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g48 ATGGCACTCTCCATTGCTTCTACGGCATTTTCTAGCCTTCCAACCAGGGAAGTATCTTCAAAACATTTTCCACGAAAACTGACAACATGGTTACCAGGAAGAGTTCGTTTGAATGCAACAAAAGGGGTATCTAGTGTTTGTGAACCACTTCCTCCCGACAGGCCATTGTGGTTCCCTGGTAGCTCACCTCCTGAGTGGCTTGATGGCAGTCTTCCTGGTGATTTTGGCTTCGACCCGCTTGGATTAGGGTCTGATCCGGAGTTACTTCGATGGTTTGCACAAGCTGAGCTGATGCACAGCAGATGGGCAATGCTTGCTGTAGCTGGGATTCTCATTCCAGAGTGCCTTGAGAGACTAGGCTTCATTGAGAATTTCTCCTGGTATGATGCTGGAGCCCAGGAGTTCTTTGCAGATCCCACAACCTTATTTGTTGTACAGTTAGCTTTGATGGGCTGGGTGGAGGGAAGAAGATGGGCTGATTTGATAAACCCTGGGTGTGTTGACATACAGCTCACGTTTCCAAATAAAGCAAAGCCAAAGCCTGATGTTGGATACCCGGGTGGCCTTTGGTTTGATCCCTTCATGTGGGGAAGAGGGTCTCCAGAGCCTGTGATGGTGCTAAGGACCAAGGAGATCAAGAACGGGCGTCTTGCAATGCTAGCTTTCGTGGGGTTCTGTTTCCAAGCCATTTATACTGGGGAAGGCCCCATTGAAAACTTGATGGCACATATTGCAGACCCTGGCCACTGCAATGTTTTCTCGGCTTTCACATCACAGTGA 780 48.85 MALSIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 701294 703811 + Vvi11g48 Vvi11g48 771489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g48 259 Pfam Chlorophyll A-B binding protein 63 229 IPR022796 -
Vvi11g48 259 SUPERFAMILY Chlorophyll a-b binding protein 53 258 - -
Vvi11g48 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 256 IPR001344 GO:0009765|GO:0016020
Vvi11g48 259 Gene3D Chlorophyll a/b binding protein domain 64 249 - -
Vvi11g48 259 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 256 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g48 K08908 - vvi:100268126 549.666