Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g480 | ATGAAAAAGGTCACGAGAAAGGTCGGAAAGTATGAGGTCGGCCGAACAATTGGCGAAGGAACTTTCGCCAAGGTTAAATTTGCGCACAACACCGAGACTGGGGAGAGCGTAGCTATGAAGGTTATGGCAAAGTCCACCATTCTTAAGCATAGGATGGTCGATCAGATTAAACAAGAGATATCCATAATGAAGATTGTCAGGCACCCTAACATAGTTAGATTGCATGAGGTCTTGGCCAGCCAGACAACGATATATATTATTCTTGAGTTTGTCACTGGAGGAGAACTATATGATAAAATTGTTCACCAAGGAAGACTCTCTGAAAATGAATCCAGGCGATACTTTCAGCAGCTTATAGATGCTGTATCACATTGTCACAGTAAGGGTGTGTACCACAGAGATCTGAAGCCTGAAAATCTACTTCTTGATTCGAATGGAAATTTGAAGGTTTCTGATTTTGGACTTAGTGCATTGCCTAAACAAGGGGTTGGACTTCTTCATACCACATGTGGAACCCCAAATTATGTTGCACCTGAGGTGCTTAGTAACCAAGGTTATGACGGTGCAGCTGCTGATGTGTGGTCATGTGGAGTCATTCTCTATGTTCTAATGGCAGGATATCTTCCATTTAATGAGATAGACCTTCCAAGCTTGTACAAAAAGATCAATGCTGCAGAGTTTTCCTGTCCATTTTGGTTTTCTTCTGGATCAAAGTCGTTACTATGTAGGATACTTGATTCCAATCCGAAAACTCGTATTCGGATTGAAGGGATAAAAAATGATCCATGGTTTCGAAAGAACTACGTGTCTAGCAAATGTAGAGAAGATGAAGAAGTGAATTTGGATGATATTCATGCGGTTTTTGATGATATTGAGGAAAATTACGTATCTGAGCAGTCAGGAAATAATGACACAGGTCCTTTGATAATGAATGCATTTGAGATGATTACCCTATCCCAAGGGTTGAATCTATCAGCACTTTTTGACAGACGACAGGATTATGTAAAACGGCAAACTCGTTTTGTTTCCCGCGAACCAGCAAAAGTTATAATTTCTACTATTGAAGCTGTGGCAGAATCTATGAATTTCAAGGTCCATACACGCCACTACAAGACAAGACTCGAGGGAATATCTGCAAATAAGACTGCACAATTTGCAGTTGTCCTAGAGGTTTTTGAAGTTGCACCATCCCTTTTCATGGTGGATGTTAGAAAGGCTGCTGGGGATACACTTGAATATCACAAGTTTTACAAGAATTTCTGTGCTAAACTTGAGCATATCATCTGGAAACCAAAAGAGGCTATGACAAATTCCAGTCTTCTAAGAACAATGACTTGCTGA | 1341 | 40.27 | MKKVTRKVGKYEVGRTIGEGTFAKVKFAHNTETGESVAMKVMAKSTILKHRMVDQIKQEISIMKIVRHPNIVRLHEVLASQTTIYIILEFVTGGELYDKIVHQGRLSENESRRYFQQLIDAVSHCHSKGVYHRDLKPENLLLDSNGNLKVSDFGLSALPKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGVILYVLMAGYLPFNEIDLPSLYKKINAAEFSCPFWFSSGSKSLLCRILDSNPKTRIRIEGIKNDPWFRKNYVSSKCREDEEVNLDDIHAVFDDIEENYVSEQSGNNDTGPLIMNAFEMITLSQGLNLSALFDRRQDYVKRQTRFVSREPAKVIISTIEAVAESMNFKVHTRHYKTRLEGISANKTAQFAVVLEVFEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLEHIIWKPKEAMTNSSLLRTMTC* | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4753253 | 4787694 | - | Vvi11g480 | Vvi11g480 | 771921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g480 | 446 | ProSiteProfiles | Protein kinase domain profile. | 11 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g480 | 446 | Pfam | Protein kinase domain | 11 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g480 | 446 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 282 | IPR011009 | - | |
Vvi11g480 | 446 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 49 | IPR017441 | GO:0005524 | |
Vvi11g480 | 446 | ProSiteProfiles | NAF domain profile. | 305 | 329 | IPR018451 | GO:0007165 | |
Vvi11g480 | 446 | Pfam | NAF domain | 307 | 366 | IPR004041 | GO:0007165 | |
Vvi11g480 | 446 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g480 | 446 | Gene3D | Kinase associated domain 1, KA1 | 304 | 430 | - | - | |
Vvi11g480 | 446 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 90 | - | - | |
Vvi11g480 | 446 | CDD | CIPK_C | 311 | 421 | - | - | |
Vvi11g480 | 446 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 272 | - | - | |
Vvi11g480 | 446 | SMART | serkin_6 | 11 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g480 | 446 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 4 | 442 | - | - | |
Vvi11g480 | 446 | PANTHER | - | 4 | 442 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76053 | PF00069 | Pkinase | 2.10E-70 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g480 | - | - | vvi:100262837 | 892.108 |