Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g480 ATGAAAAAGGTCACGAGAAAGGTCGGAAAGTATGAGGTCGGCCGAACAATTGGCGAAGGAACTTTCGCCAAGGTTAAATTTGCGCACAACACCGAGACTGGGGAGAGCGTAGCTATGAAGGTTATGGCAAAGTCCACCATTCTTAAGCATAGGATGGTCGATCAGATTAAACAAGAGATATCCATAATGAAGATTGTCAGGCACCCTAACATAGTTAGATTGCATGAGGTCTTGGCCAGCCAGACAACGATATATATTATTCTTGAGTTTGTCACTGGAGGAGAACTATATGATAAAATTGTTCACCAAGGAAGACTCTCTGAAAATGAATCCAGGCGATACTTTCAGCAGCTTATAGATGCTGTATCACATTGTCACAGTAAGGGTGTGTACCACAGAGATCTGAAGCCTGAAAATCTACTTCTTGATTCGAATGGAAATTTGAAGGTTTCTGATTTTGGACTTAGTGCATTGCCTAAACAAGGGGTTGGACTTCTTCATACCACATGTGGAACCCCAAATTATGTTGCACCTGAGGTGCTTAGTAACCAAGGTTATGACGGTGCAGCTGCTGATGTGTGGTCATGTGGAGTCATTCTCTATGTTCTAATGGCAGGATATCTTCCATTTAATGAGATAGACCTTCCAAGCTTGTACAAAAAGATCAATGCTGCAGAGTTTTCCTGTCCATTTTGGTTTTCTTCTGGATCAAAGTCGTTACTATGTAGGATACTTGATTCCAATCCGAAAACTCGTATTCGGATTGAAGGGATAAAAAATGATCCATGGTTTCGAAAGAACTACGTGTCTAGCAAATGTAGAGAAGATGAAGAAGTGAATTTGGATGATATTCATGCGGTTTTTGATGATATTGAGGAAAATTACGTATCTGAGCAGTCAGGAAATAATGACACAGGTCCTTTGATAATGAATGCATTTGAGATGATTACCCTATCCCAAGGGTTGAATCTATCAGCACTTTTTGACAGACGACAGGATTATGTAAAACGGCAAACTCGTTTTGTTTCCCGCGAACCAGCAAAAGTTATAATTTCTACTATTGAAGCTGTGGCAGAATCTATGAATTTCAAGGTCCATACACGCCACTACAAGACAAGACTCGAGGGAATATCTGCAAATAAGACTGCACAATTTGCAGTTGTCCTAGAGGTTTTTGAAGTTGCACCATCCCTTTTCATGGTGGATGTTAGAAAGGCTGCTGGGGATACACTTGAATATCACAAGTTTTACAAGAATTTCTGTGCTAAACTTGAGCATATCATCTGGAAACCAAAAGAGGCTATGACAAATTCCAGTCTTCTAAGAACAATGACTTGCTGA 1341 40.27 MKKVTRKVGKYEVGRTIGEGTFAKVKFAHNTETGESVAMKVMAKSTILKHRMVDQIKQEISIMKIVRHPNIVRLHEVLASQTTIYIILEFVTGGELYDKIVHQGRLSENESRRYFQQLIDAVSHCHSKGVYHRDLKPENLLLDSNGNLKVSDFGLSALPKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGVILYVLMAGYLPFNEIDLPSLYKKINAAEFSCPFWFSSGSKSLLCRILDSNPKTRIRIEGIKNDPWFRKNYVSSKCREDEEVNLDDIHAVFDDIEENYVSEQSGNNDTGPLIMNAFEMITLSQGLNLSALFDRRQDYVKRQTRFVSREPAKVIISTIEAVAESMNFKVHTRHYKTRLEGISANKTAQFAVVLEVFEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLEHIIWKPKEAMTNSSLLRTMTC* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4753253 4787694 - Vvi11g480 Vvi11g480 771921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g480 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g480 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g480 446 SUPERFAMILY Protein kinase-like (PK-like) 8 282 IPR011009 -
Vvi11g480 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Vvi11g480 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vvi11g480 446 Pfam NAF domain 307 366 IPR004041 GO:0007165
Vvi11g480 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vvi11g480 446 Gene3D Kinase associated domain 1, KA1 304 430 - -
Vvi11g480 446 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vvi11g480 446 CDD CIPK_C 311 421 - -
Vvi11g480 446 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Vvi11g480 446 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g480 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 442 - -
Vvi11g480 446 PANTHER - 4 442 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76053 PF00069 Pkinase 2.10E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g480 - - vvi:100262837 892.108