Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi11g495 | ATGTCGAGCTGCATCGATGTTGCGTCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCTTGTTTGACATCGTGACCGTCCGATGCGGACACTGCACCAATCTATGGTCCGTGAATATGGCAGCTGCATTTCAATCACTGTCATGGCAAGATGTTCAGGCACCCAACTACACTTCTCCAGATTACAGGATTGACTTGGGTTCCTCTTCCAAATGCAACACCAAGATGGCCATGCGAGCACCAGCCTCGAATATCTCTGAGGAAAGGATTGTGAATCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTACAATCAGTTCATAAAAGAGGAGATTCAGAGGATCAAAGCCAATAATCCAGATATCAGCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCGCACTTCCCCCATATCCATTTCGGTTTGATGTTAGAAACCAACAATCAACCAAAACTGGACGAGGGCTCTGAGAAGCACCTAATGTCAAAGGCTGCACTACGGAACAAATGA | 558 | 47.67 | MSSCIDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPNYTSPDYRIDLGSSSKCNTKMAMRAPASNISEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQPKLDEGSEKHLMSKAALRNK* | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5013886 | 5017668 | + | Vvi11g495 | Vvi11g495 | 771936 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi11g495 | 185 | SUPERFAMILY | HMG-box | 103 | 151 | IPR036910 | - | |
| Vvi11g495 | 185 | Gene3D | High mobility group box domain | 96 | 154 | IPR036910 | - | |
| Vvi11g495 | 185 | Pfam | YABBY protein | 8 | 158 | IPR006780 | GO:0007275 | |
| Vvi11g495 | 185 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 175 | - | - | |
| Vvi11g495 | 185 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 175 | IPR006780 | GO:0007275 |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 13736 | PF04690 | YABBY | 9.80E-70 | CL0114 | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi11g495 | K25796 | - | vvi:100254328 | 384.415 |