Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g495 ATGTCGAGCTGCATCGATGTTGCGTCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCTTGTTTGACATCGTGACCGTCCGATGCGGACACTGCACCAATCTATGGTCCGTGAATATGGCAGCTGCATTTCAATCACTGTCATGGCAAGATGTTCAGGCACCCAACTACACTTCTCCAGATTACAGGATTGACTTGGGTTCCTCTTCCAAATGCAACACCAAGATGGCCATGCGAGCACCAGCCTCGAATATCTCTGAGGAAAGGATTGTGAATCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTACAATCAGTTCATAAAAGAGGAGATTCAGAGGATCAAAGCCAATAATCCAGATATCAGCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCGCACTTCCCCCATATCCATTTCGGTTTGATGTTAGAAACCAACAATCAACCAAAACTGGACGAGGGCTCTGAGAAGCACCTAATGTCAAAGGCTGCACTACGGAACAAATGA 558 47.67 MSSCIDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPNYTSPDYRIDLGSSSKCNTKMAMRAPASNISEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQPKLDEGSEKHLMSKAALRNK* 186
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 5013886 5017668 + Vvi11g495 Vvi11g495 771936
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g495 185 SUPERFAMILY HMG-box 103 151 IPR036910 -
Vvi11g495 185 Gene3D High mobility group box domain 96 154 IPR036910 -
Vvi11g495 185 Pfam YABBY protein 8 158 IPR006780 GO:0007275
Vvi11g495 185 PANTHER AXIAL REGULATOR YABBY 5 1 175 - -
Vvi11g495 185 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13736 PF04690 YABBY 9.80E-70 CL0114 Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g495 K25796 - vvi:100254328 384.415