Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g508 ATGGAGAAGAATTGTGGGTGCTGGGCTGTTCTTAAACGCGGTGTTAGAGGTTCCTGCAAGTCCTCTGCTTCTAGGGATTCTGTTAACACTATTCCTCGGACCAGTCTCGTTTATGATGCTGCCACTGAGACGCGATATCTAAACGCAAGTAACCGGGAGCTCTATGCTCCGAATGAAGCTCAGCTCTCTTCCGATAATCCCAATCCATCAGCAACTGAAAACAAAGATGTGTGCCAGCTGCTACAATTTACTTTCCAGGAGCTAAAGTCTGCAACAGGAAACTTCAGGCCGGATAGTATTCTTGGGGAAGGTGGATTTGGATATGTCTTCAAAGGATGGATAGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAGGTAGGCTTCCTTGGACAGCTTCACCACCCTAATCTTGTTAAACTTATTGGGTACTGCATTGAAGATGATCAGCGACTGCTTGTTTATGAATTTATGACCCGTGGAAGCCTTGAAAATCACCTTTTCAGAAGGACCATACCTCTTCCATGGTCCAACAGGATTAAGATTGCACTTGGTGCAGCAAAAGGGCTGGCCTTTCTCCACGAGGGTCCTGAACCTGTTATTTACAGGGACTTCAAGACGTCCAACATTTTACTTGATTCGGAATATAATGCAAAGCTTTCAGATTTCGGTCTGGCAAAAGCTGGCCCTCAGGAAGGTGACACACATGTTTCAACAAGGGTTGTTGGAACATATGGCTATGCTGCTCCCGAATATGTGAGGACAGGACACTTGACATCTAAGAGCGATGTTTACAGCTTTGGGGTTGTGCTACTTGAGATTTTAACTGGTAGAAGATCAATGGACAAGAAACGCCCTCGCGGAGAACAGAATCTTGTTGCATGGGCTAGGCCTTATTTGGCTGACAAGCGAAAGCTTTACCAAATAGTTGATCCCCGCCTGGAACTGAATTACTCCCTTAAAGGGGTGCAGAAAGTCTCTCAGTTAGCTTACAACTGCCTCAGTGCGGACCCCAAATCCCGCCCTTGCATGGATGAAGTTGTAAAGGTTCTCACTCCGTTGCAAGACCTCAACGACCTTGCCATCCTATCTTATCACTCCCGCTTATCTCAGCAAGGGCGACGCAAGAAGAAACCGGATGGAACTCCACAGGTCACCTACAACCAGTCCAAAAGCATGAGAGGCTCTCCATTGAACACTGGTAAGCAGCATTGTAGATAA 1290 46.98 MEKNCGCWAVLKRGVRGSCKSSASRDSVNTIPRTSLVYDAATETRYLNASNRELYAPNEAQLSSDNPNPSATENKDVCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVGFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHEGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQEGDTHVSTRVVGTYGYAAPEYVRTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPRGEQNLVAWARPYLADKRKLYQIVDPRLELNYSLKGVQKVSQLAYNCLSADPKSRPCMDEVVKVLTPLQDLNDLAILSYHSRLSQQGRRKKKPDGTPQVTYNQSKSMRGSPLNTGKQHCR* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5210790 5215642 - Vvi11g508 Vvi11g508 771949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g508 429 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Vvi11g508 429 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Vvi11g508 429 Gene3D Phosphorylase Kinase; domain 1 70 180 - -
Vvi11g508 429 SUPERFAMILY Protein kinase-like (PK-like) 78 381 IPR011009 -
Vvi11g508 429 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Vvi11g508 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vvi11g508 429 CDD STKc_IRAK 101 377 - -
Vvi11g508 429 ProSiteProfiles Protein kinase domain profile. 95 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g508 429 MobiDBLite consensus disorder prediction 405 429 - -
Vvi11g508 429 PANTHER OS01G0588500 PROTEIN-RELATED 60 399 - -
Vvi11g508 429 PANTHER OS01G0588500 PROTEIN 60 399 - -
Vvi11g508 429 MobiDBLite consensus disorder prediction 391 429 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76055 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g508 - - vvi:100256105 874.004