Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g517 ATGATGAGTATGCATGGCGGAGATAAGAGAGGAGGGAGTAGCACTAGGGCAGGCAATGAGTCCGAAGAAGAAGATTACGAGATCGAGATCGATGGGCTTCAAGATAAAGCCTCGTGGAGAACTTGGTTCAGGTCCCTGGTCTGCCGCCAGCAGACCGTGCCGGATTCTGCTCGGAGTCGAATGACTCGAATTGTCAGGAACGCGGCTGCTACGGCCAATGAAAACAGAGGCAGATTCGTCATTCGTCCAGATAACTGGTGGTATATGGTATGGACGCAATTCATACTGATATGGGCAGTCTACTCGTCATTCTTCACACCAATGGAGTTCGGATTCTTCAGAGGCTTGCCGGAGAATCTTTTCCTTCTCGACATTGCCGGCCAGTTGGCGTTTCTCGTCGACATCGTCGTCCGCTTCTTCGTCGCCTTTCGTGACACTCAGTCATACACTACTGTCGACAGCCACAAGCGCATCGCCCTCAGGTACTTGAAATCTCGGTTTGTGGTCGATTTTCTCGGATGTCTGCCACTGGATGCTATTTACCGGTTTTGTGGCAGGAAAGAACCGGTGAGGTACCTATTGTGGATTAGGCTAAGTCGGGCACTAAGAGTTACAGAGTTTTTTGAGAAGTTGGAGAAAGATATCCGAATCAATTACTTGTTTACAAGAATTGTGAAACTTCTTGTTGTTGAACTATATTGCACACACGCTGCTGCCTGCATCTTTTACTATCTTGCCACCACCATGCCTGCCTCCCAGGAAGGTTATACGTGGATAGGAAGCCTAACGATGGGTGACTATAGTTATTCTCATTTCAGAGATATTGATCTTTGGAAGCGCTATTTTACATCGCTATATTTTGCCATTGTTACAATGGCAACTGTTGGTTCTGGAGACATACATGCAGTCAATGTCAGGGAAATGCTATTTGTCATGGCTTATGTCTCCTTTGACATGATTCTTGGAGCTTATCTGCTTGGTAACATGACAGCATTGATCGTCAAAGGATCAAAGACAGAAAAGTTTAGGGATAGAATGGCAGAACTTATTAGCTACATGAACAGAAACAAACTTGGGAGGCAGATAAGTAATGAAATCAAACACCATGTGCGATCGCAGCACGAGACCAGCTACACAGAAGCTGCTTTTCTTCAGGATATTCCAGTGTCTATTCGTGCTAAGATCTCACAAAAGTTATATGGGCCCTACATTAAAGAGGTTTCTCTTTTCAAGGGATGCTCCTCGGGATTCCTTAAGCAGATTGCAACCAGAGTCCACGAGGAAATTTTCCTCCCAGGAGAAGTGATACTTGAAGAGGAAAATATGGTGGATCAACTTTATATTGTCTGTAATGGTAAACTGAAGCGAGTAGGAAGCAATGAAGACGAAATTGAAGGACCTCTGATGCATCTACAAACTAATGACTCATTTGGTGAAATTCCTCTTTTATGTAACACTCCTCTGGCTTATACAGTTCAAGTTGTTGAACTATGCAGGCTTGTGCGACTTGATAAACAATCTTTCATAAACATTCTTGAGATATACTTTTCTGATGGGCAGATCATATTAAACAACCTTCTTGAGGGAAAAGGATCAAATCTTCGAAACAAGATATTGGAATCTGATATCACACTTTATATTGGAAAGCATGAGGCAGAGGTGGCTATGAGGGTAAATTGTGCTGCTTATAATGGAGATTTGTACCAACTAAGGCGTTTGATTGAGGCAGGAGCAGATCCCAATAAGACAGACTATGATGGAAGATCGCCTTTGCATTTTGCGGCATCCAAGGGATATGAAGATATTACTGATTTCCTTATTGAACTGAGAGTGAACATCCATCTTTCAGATAATCATGGAAACACTCCCTTGCTTGAAGCCATAAAGAATGGGCATGATGGAGTCACTTCTTTACTAGTTAAAGCAGGGGCATTATTGACAGTGGAAGACGCTGGTGGCTGTCTCTGCATGACTGTCGTAAGGAGGGATTTAAATTTTTTGAAAAGGCTTTTGGCCAATGGCATTAATCCAAATGCCAAAAATTATGATTCACGAACGCCACTTCATCTTGCTGCCTCAGAAGGGTTATATTCAATGACAAATTTACTGTTGGAAGCAGGGGCAAGTGTTCTCGCAAAGGATAGATGGGGAAATACTCCACTTGATGAAGCTCGCATTGGTGGAAATAAGAATTTAATCAAGCTTCTGGAAGAAGCGATGTCTGCTCAGTTGTCTGAATTCTCTTCTTGCTCTCAAGAAATTCGAGCTGATAAAATGCGACAAAGGAAGTGCACTGTGTTCCCCTTCCACCCTTGGGATTCCAAAGAGGAGAGAAAGCAGGGAGTTGTATTATGGATTCCGAAGACCATTGAAGAGCTCATCGAGACAGCCATGGATCAGTTAAAATGTTCTAGTGGCTCCTGCATTTTATCTGAAAATGGAGCTAAAATTACTAACATTGACATGATCAGCGATGAAGAGAAGCTATTTTTGGTTGCTGAGACAATATAG 2511 43.01 MMSMHGGDKRGGSSTRAGNESEEEDYEIEIDGLQDKASWRTWFRSLVCRQQTVPDSARSRMTRIVRNAAATANENRGRFVIRPDNWWYMVWTQFILIWAVYSSFFTPMEFGFFRGLPENLFLLDIAGQLAFLVDIVVRFFVAFRDTQSYTTVDSHKRIALRYLKSRFVVDFLGCLPLDAIYRFCGRKEPVRYLLWIRLSRALRVTEFFEKLEKDIRINYLFTRIVKLLVVELYCTHAAACIFYYLATTMPASQEGYTWIGSLTMGDYSYSHFRDIDLWKRYFTSLYFAIVTMATVGSGDIHAVNVREMLFVMAYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMAELISYMNRNKLGRQISNEIKHHVRSQHETSYTEAAFLQDIPVSIRAKISQKLYGPYIKEVSLFKGCSSGFLKQIATRVHEEIFLPGEVILEEENMVDQLYIVCNGKLKRVGSNEDEIEGPLMHLQTNDSFGEIPLLCNTPLAYTVQVVELCRLVRLDKQSFINILEIYFSDGQIILNNLLEGKGSNLRNKILESDITLYIGKHEAEVAMRVNCAAYNGDLYQLRRLIEAGADPNKTDYDGRSPLHFAASKGYEDITDFLIELRVNIHLSDNHGNTPLLEAIKNGHDGVTSLLVKAGALLTVEDAGGCLCMTVVRRDLNFLKRLLANGINPNAKNYDSRTPLHLAASEGLYSMTNLLLEAGASVLAKDRWGNTPLDEARIGGNKNLIKLLEEAMSAQLSEFSSCSQEIRADKMRQRKCTVFPFHPWDSKEERKQGVVLWIPKTIEELIETAMDQLKCSSGSCILSENGAKITNIDMISDEEKLFLVAETI* 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5309194 5325863 - Vvi11g517 Vvi11g517 771958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g517 836 Gene3D - 650 755 IPR036770 -
Vvi11g517 836 Pfam KHA, dimerisation domain of potassium ion channel 762 831 IPR021789 -
Vvi11g517 836 Pfam Ankyrin repeats (many copies) 670 724 IPR002110 GO:0005515
Vvi11g517 836 PANTHER POTASSIUM CHANNEL SKOR-LIKE 15 835 - -
Vvi11g517 836 Pfam Ankyrin repeats (3 copies) 561 649 IPR002110 GO:0005515
Vvi11g517 836 ProSiteProfiles Ankyrin repeat profile. 586 618 IPR002110 GO:0005515
Vvi11g517 836 PRINTS Ankyrin repeat signature 587 602 IPR002110 GO:0005515
Vvi11g517 836 PRINTS Ankyrin repeat signature 699 713 IPR002110 GO:0005515
Vvi11g517 836 Gene3D Jelly Rolls 379 544 IPR014710 -
Vvi11g517 836 Gene3D - 88 335 - -
Vvi11g517 836 ProSiteProfiles Ankyrin repeat region circular profile. 683 715 - -
Vvi11g517 836 Gene3D - 549 649 IPR036770 -
Vvi11g517 836 Pfam Ion transport protein 89 334 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi11g517 836 SUPERFAMILY cAMP-binding domain-like 337 526 IPR018490 -
Vvi11g517 836 PRINTS EAG/ELK/ERG potassium channel family signature 124 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g517 836 PRINTS EAG/ELK/ERG potassium channel family signature 233 243 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g517 836 PRINTS EAG/ELK/ERG potassium channel family signature 281 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g517 836 PRINTS EAG/ELK/ERG potassium channel family signature 325 334 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g517 836 ProSiteProfiles Ankyrin repeat profile. 619 651 IPR002110 GO:0005515
Vvi11g517 836 ProSiteProfiles Ankyrin repeat region circular profile. 619 650 - -
Vvi11g517 836 MobiDBLite consensus disorder prediction 1 25 - -
Vvi11g517 836 PANTHER POTASSIUM CHANNEL AKT1 15 835 IPR045319 GO:0005249|GO:0006813
Vvi11g517 836 SMART cnmp_10 409 527 IPR000595 -
Vvi11g517 836 ProSiteProfiles KHA domain profile. 763 836 IPR021789 -
Vvi11g517 836 Pfam Cyclic nucleotide-binding domain 430 513 IPR000595 -
Vvi11g517 836 ProSiteProfiles cAMP/cGMP binding motif profile. 409 512 IPR000595 -
Vvi11g517 836 CDD CAP_ED 409 523 IPR000595 -
Vvi11g517 836 SUPERFAMILY Voltage-gated potassium channels 83 334 - -
Vvi11g517 836 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 586 615 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 683 712 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 619 648 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 553 582 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 650 679 IPR002110 GO:0005515
Vvi11g517 836 SMART ANK_2a 716 746 IPR002110 GO:0005515
Vvi11g517 836 ProSiteProfiles Ankyrin repeat region circular profile. 586 618 - -
Vvi11g517 836 SUPERFAMILY Ankyrin repeat 543 738 IPR036770 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g517 K21867 - vvi:100257630 1668.67