Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g52 | ATGGATTTTGATGAGAAGCAGGCTGTTGTCTGTGACAATGGGTCTGGCTTAGTGAAGGCTGGTTTTGCTGGAGACGATGCACCATGTGTAGTTTTTCCTAGTGTGATAGGCTGGCCCCGAAACAAGCATGCGATGATTGGCATTGGACAGAAGGAAATGTACTTAGGAGATGAAGCTCAAGCAAGACGTGGTGTCCTCAGATTAAGTTACCCCATTAATCATGGAATGGTGAGAGATTGGGAAGCAATGGAGAGACTCTGGCAGCACACTTTTGAGAAGGAGCTCAGGGTTTCCATTGAAGAACGACCTGTCCTCTTAACAGAGCCACCCTTGAATCCTAAGTTCAATAAGGAGAAGATGGTGGAGATCATGTTTGAAGCTTTTGAAATCCCAGCCACCTATGTTGCAATTCAAGCTGTGCTCTCCTTGTATGCCAGTGGCCGAACCACAGGTATTGTAATGGACTCTGGAGAAGGAGTCACACATGTGGTTCCCATCTATGAGGGCTATGCACTTCCACATGCAATTCAACGTCTCGATCTAGCAGGCAGGGACCTCACAGACTACCTCACCAAGATCCTAACTGAAGAAGGCTACGTGTTCACCACATCAGCTGACAGAGAAATTGTTAAGGACATAAAGGAACAAACCACATACGTAGCAATGGATTTTGAGAAGGAACTAGCCACATCAAGGGAAAGCTTAGAGCTTGACAAGCAATATGAATTGCCAGACGGGCAAGTCATAACAATCGGAACAGGACGGTTCAAGTGCCCTGAAATACTATTTGATCCAAGCAAAGTGGGAATAGAGTCATGTGGAGTACATGATATCGTGTTGAAGTCAATTAGAAGGTGTGATATGGATATCAGGAGAGACATGTATGGGAATGTGGTGCTTAGTGGGGGCACTACTATGGTGCCAGGCTTGGCTGATAGGCTGGCGAAGGAGCTGAGCTCACTGGCACCTCCTGGGGTGAGGGTGAGAGTGGTTGCACCACCAGAGAGGAAGTATAGTGTTTGGATTGGTGGGTCCATTCTGGCTTCACTAAGCACCTTTGAGCAGATGTGGATTAAAAAGGAAGAGTACATGGAGTCCGGTTCCTCCATTGTCCACATGAAATGCTTCTAA | 1131 | 46.77 | MDFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQARRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMVEIMFEAFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLDLAGRDLTDYLTKILTEEGYVFTTSADREIVKDIKEQTTYVAMDFEKELATSRESLELDKQYELPDGQVITIGTGRFKCPEILFDPSKVGIESCGVHDIVLKSIRRCDMDIRRDMYGNVVLSGGTTMVPGLADRLAKELSSLAPPGVRVRVVAPPERKYSVWIGGSILASLSTFEQMWIKKEEYMESGSSIVHMKCF* | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 713294 | 714860 | + | Vvi11g52 | Vvi11g52 | 771493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g52 | 376 | Pfam | Actin | 4 | 376 | IPR004000 | - | |
Vvi11g52 | 376 | SUPERFAMILY | Actin-like ATPase domain | 4 | 153 | IPR043129 | - | |
Vvi11g52 | 376 | Gene3D | Actin; Chain A, domain 4 | 181 | 272 | - | - | |
Vvi11g52 | 376 | SMART | actin_3 | 6 | 376 | IPR004000 | - | |
Vvi11g52 | 376 | Gene3D | - | 139 | 339 | - | - | |
Vvi11g52 | 376 | ProSitePatterns | Actins and actin-related proteins signature. | 105 | 117 | IPR020902 | - | |
Vvi11g52 | 376 | CDD | NBD_sugar-kinase_HSP70_actin | 9 | 182 | - | - | |
Vvi11g52 | 376 | PANTHER | PUTATIVE-RELATED | 1 | 375 | - | - | |
Vvi11g52 | 376 | Gene3D | - | 9 | 370 | - | - | |
Vvi11g52 | 376 | ProSitePatterns | Actins signature 1. | 54 | 64 | IPR004001 | - | |
Vvi11g52 | 376 | PANTHER | ACTIN | 1 | 375 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 27 | 36 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 50 | 61 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 62 | 84 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 116 | 129 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 141 | 160 | IPR004000 | - | |
Vvi11g52 | 376 | PRINTS | Actin signature | 237 | 253 | IPR004000 | - | |
Vvi11g52 | 376 | SUPERFAMILY | Actin-like ATPase domain | 148 | 376 | IPR043129 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g52 | K10355 | K05692 | vvi:100266293 | 744.962 |