Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g52 ATGGATTTTGATGAGAAGCAGGCTGTTGTCTGTGACAATGGGTCTGGCTTAGTGAAGGCTGGTTTTGCTGGAGACGATGCACCATGTGTAGTTTTTCCTAGTGTGATAGGCTGGCCCCGAAACAAGCATGCGATGATTGGCATTGGACAGAAGGAAATGTACTTAGGAGATGAAGCTCAAGCAAGACGTGGTGTCCTCAGATTAAGTTACCCCATTAATCATGGAATGGTGAGAGATTGGGAAGCAATGGAGAGACTCTGGCAGCACACTTTTGAGAAGGAGCTCAGGGTTTCCATTGAAGAACGACCTGTCCTCTTAACAGAGCCACCCTTGAATCCTAAGTTCAATAAGGAGAAGATGGTGGAGATCATGTTTGAAGCTTTTGAAATCCCAGCCACCTATGTTGCAATTCAAGCTGTGCTCTCCTTGTATGCCAGTGGCCGAACCACAGGTATTGTAATGGACTCTGGAGAAGGAGTCACACATGTGGTTCCCATCTATGAGGGCTATGCACTTCCACATGCAATTCAACGTCTCGATCTAGCAGGCAGGGACCTCACAGACTACCTCACCAAGATCCTAACTGAAGAAGGCTACGTGTTCACCACATCAGCTGACAGAGAAATTGTTAAGGACATAAAGGAACAAACCACATACGTAGCAATGGATTTTGAGAAGGAACTAGCCACATCAAGGGAAAGCTTAGAGCTTGACAAGCAATATGAATTGCCAGACGGGCAAGTCATAACAATCGGAACAGGACGGTTCAAGTGCCCTGAAATACTATTTGATCCAAGCAAAGTGGGAATAGAGTCATGTGGAGTACATGATATCGTGTTGAAGTCAATTAGAAGGTGTGATATGGATATCAGGAGAGACATGTATGGGAATGTGGTGCTTAGTGGGGGCACTACTATGGTGCCAGGCTTGGCTGATAGGCTGGCGAAGGAGCTGAGCTCACTGGCACCTCCTGGGGTGAGGGTGAGAGTGGTTGCACCACCAGAGAGGAAGTATAGTGTTTGGATTGGTGGGTCCATTCTGGCTTCACTAAGCACCTTTGAGCAGATGTGGATTAAAAAGGAAGAGTACATGGAGTCCGGTTCCTCCATTGTCCACATGAAATGCTTCTAA 1131 46.77 MDFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQARRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMVEIMFEAFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLDLAGRDLTDYLTKILTEEGYVFTTSADREIVKDIKEQTTYVAMDFEKELATSRESLELDKQYELPDGQVITIGTGRFKCPEILFDPSKVGIESCGVHDIVLKSIRRCDMDIRRDMYGNVVLSGGTTMVPGLADRLAKELSSLAPPGVRVRVVAPPERKYSVWIGGSILASLSTFEQMWIKKEEYMESGSSIVHMKCF* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 713294 714860 + Vvi11g52 Vvi11g52 771493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g52 376 Pfam Actin 4 376 IPR004000 -
Vvi11g52 376 SUPERFAMILY Actin-like ATPase domain 4 153 IPR043129 -
Vvi11g52 376 Gene3D Actin; Chain A, domain 4 181 272 - -
Vvi11g52 376 SMART actin_3 6 376 IPR004000 -
Vvi11g52 376 Gene3D - 139 339 - -
Vvi11g52 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Vvi11g52 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Vvi11g52 376 PANTHER PUTATIVE-RELATED 1 375 - -
Vvi11g52 376 Gene3D - 9 370 - -
Vvi11g52 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Vvi11g52 376 PANTHER ACTIN 1 375 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 27 36 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 50 61 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 62 84 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 116 129 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 141 160 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 237 253 IPR004000 -
Vvi11g52 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g52 K10355 ACTF; actin, other eukaryote K05692 vvi:100266293 744.962
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 2.3e-214 741.5
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT2G37620 97.3 5.2e-214 740.3
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT2G37620 95.8 2.6e-213 738.0
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT2G37620 67.8 1.5e-157 552.7
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT2G37620 74.3 1.3e-153 539.7
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT2G37620 74.1 1.7e-153 539.3
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-214 742.7
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-210 729.2
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT5G59370 94.7 3.5e-210 727.6
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT5G59370 67.8 9.9e-157 550.1
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT5G59370 74.1 3.9e-153 538.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT5G59370 74.1 2.5e-152 535.4
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 4.7e-215 743.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT3G46520 96.5 5.3e-211 730.3
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G46520 95.0 1.6e-210 728.8
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT3G46520 67.6 2.9e-156 548.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G46520 74.1 3.9e-153 538.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G46520 74.1 2.5e-152 535.4
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 1.5e-216 748.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT3G12110 97.3 2.0e-213 738.4
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G12110 95.8 9.7e-213 736.1
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT3G12110 68.6 1.8e-158 555.8
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G12110 75.1 9.3e-155 543.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G12110 74.6 6.0e-154 540.8
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 5.9e-210 726.9
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT3G18780 92.6 1.5e-208 722.2
Vvi6g432 . 1 377 Cytoskeleton Gene Families AT3G18780 92.1 6.1e-207 716.8
Vvi11g52 . 4 377 Cytoskeleton Gene Families AT3G18780 67.6 2.9e-156 548.5
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT3G18780 72.2 1.8e-150 529.3
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT3G18780 72.0 1.2e-149 526.6
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 2.0e-210 728.4
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT1G49240 92.9 5.0e-209 723.8
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT1G49240 92.2 1.0e-206 716.1
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT1G49240 67.6 9.9e-157 550.1
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT1G49240 72.2 4.0e-150 528.1
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT1G49240 72.0 4.0e-150 528.1
Vvi4g1241 . 32 409 Cytoskeleton Gene Families AT5G09810 98.7 8.5e-217 749.6
Vvi13g295 . 1 378 Cytoskeleton Gene Families AT5G09810 96.0 2.0e-213 738.4
Vvi6g432 . 4 377 Cytoskeleton Gene Families AT5G09810 96.8 1.3e-212 735.7
Vvi11g52 . 2 377 Cytoskeleton Gene Families AT5G09810 68.4 8.9e-158 553.5
Vvi12g630 . 1 289 Cytoskeleton Gene Families AT5G09810 75.7 8.4e-156 547.0
Vvi8g1271 . 1 290 Cytoskeleton Gene Families AT5G09810 75.1 4.6e-154 541.2
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT2G19760 76.5 1.3e-58 222.6
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT2G19760 78.0 5.3e-57 217.2
Vvi11g252 ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 1.7e-55 212.2
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT2G19760 73.9 4.2e-54 207.6
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT4G29350 75.0 9.0e-57 216.5
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT4G29350 76.5 4.5e-56 214.2
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 8.5e-55 209.9
Vvi11g252 ECH 1 132 Cytoskeleton Gene Families AT4G29350 72.7 1.4e-54 209.1
Vvi4g34 ECH 1 87 Cytoskeleton Gene Families AT5G56600 81.6 1.0e-37 152.9
Vvi9g263 ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 3.0e-37 151.4
Vvi11g251 . 1 134 Cytoskeleton Gene Families AT4G29340 82.2 1.9e-62 235.3
Vvi9g263 ECH 1 132 Cytoskeleton Gene Families AT4G29340 75.6 3.4e-59 224.6
Vvi4g34 ECH 1 132 Cytoskeleton Gene Families AT4G29340 73.3 5.1e-55 210.7
Vvi11g252 ECH 1 132 Cytoskeleton Gene Families AT4G29340 68.9 2.8e-53 204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276