Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g52 ATGGATTTTGATGAGAAGCAGGCTGTTGTCTGTGACAATGGGTCTGGCTTAGTGAAGGCTGGTTTTGCTGGAGACGATGCACCATGTGTAGTTTTTCCTAGTGTGATAGGCTGGCCCCGAAACAAGCATGCGATGATTGGCATTGGACAGAAGGAAATGTACTTAGGAGATGAAGCTCAAGCAAGACGTGGTGTCCTCAGATTAAGTTACCCCATTAATCATGGAATGGTGAGAGATTGGGAAGCAATGGAGAGACTCTGGCAGCACACTTTTGAGAAGGAGCTCAGGGTTTCCATTGAAGAACGACCTGTCCTCTTAACAGAGCCACCCTTGAATCCTAAGTTCAATAAGGAGAAGATGGTGGAGATCATGTTTGAAGCTTTTGAAATCCCAGCCACCTATGTTGCAATTCAAGCTGTGCTCTCCTTGTATGCCAGTGGCCGAACCACAGGTATTGTAATGGACTCTGGAGAAGGAGTCACACATGTGGTTCCCATCTATGAGGGCTATGCACTTCCACATGCAATTCAACGTCTCGATCTAGCAGGCAGGGACCTCACAGACTACCTCACCAAGATCCTAACTGAAGAAGGCTACGTGTTCACCACATCAGCTGACAGAGAAATTGTTAAGGACATAAAGGAACAAACCACATACGTAGCAATGGATTTTGAGAAGGAACTAGCCACATCAAGGGAAAGCTTAGAGCTTGACAAGCAATATGAATTGCCAGACGGGCAAGTCATAACAATCGGAACAGGACGGTTCAAGTGCCCTGAAATACTATTTGATCCAAGCAAAGTGGGAATAGAGTCATGTGGAGTACATGATATCGTGTTGAAGTCAATTAGAAGGTGTGATATGGATATCAGGAGAGACATGTATGGGAATGTGGTGCTTAGTGGGGGCACTACTATGGTGCCAGGCTTGGCTGATAGGCTGGCGAAGGAGCTGAGCTCACTGGCACCTCCTGGGGTGAGGGTGAGAGTGGTTGCACCACCAGAGAGGAAGTATAGTGTTTGGATTGGTGGGTCCATTCTGGCTTCACTAAGCACCTTTGAGCAGATGTGGATTAAAAAGGAAGAGTACATGGAGTCCGGTTCCTCCATTGTCCACATGAAATGCTTCTAA 1131 46.77 MDFDEKQAVVCDNGSGLVKAGFAGDDAPCVVFPSVIGWPRNKHAMIGIGQKEMYLGDEAQARRGVLRLSYPINHGMVRDWEAMERLWQHTFEKELRVSIEERPVLLTEPPLNPKFNKEKMVEIMFEAFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLDLAGRDLTDYLTKILTEEGYVFTTSADREIVKDIKEQTTYVAMDFEKELATSRESLELDKQYELPDGQVITIGTGRFKCPEILFDPSKVGIESCGVHDIVLKSIRRCDMDIRRDMYGNVVLSGGTTMVPGLADRLAKELSSLAPPGVRVRVVAPPERKYSVWIGGSILASLSTFEQMWIKKEEYMESGSSIVHMKCF* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 713294 714860 + Vvi11g52 Vvi11g52 771493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g52 376 Pfam Actin 4 376 IPR004000 -
Vvi11g52 376 SUPERFAMILY Actin-like ATPase domain 4 153 IPR043129 -
Vvi11g52 376 Gene3D Actin; Chain A, domain 4 181 272 - -
Vvi11g52 376 SMART actin_3 6 376 IPR004000 -
Vvi11g52 376 Gene3D - 139 339 - -
Vvi11g52 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Vvi11g52 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Vvi11g52 376 PANTHER PUTATIVE-RELATED 1 375 - -
Vvi11g52 376 Gene3D - 9 370 - -
Vvi11g52 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Vvi11g52 376 PANTHER ACTIN 1 375 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 27 36 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 50 61 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 62 84 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 116 129 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 141 160 IPR004000 -
Vvi11g52 376 PRINTS Actin signature 237 253 IPR004000 -
Vvi11g52 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g52 K10355 K05692 vvi:100266293 744.962