Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g544 ATGTCTGCTCAACCCAATGCAGACGAGGAGTCCCAGGCCCAACCACTCCTCGACCCTTCCCTCCATCGATCACTCTCCAACGTTACTTCCCAGGTCGCTATTGTTGGCTCCAACGTCTGCCCAATCGAGAGTCTTGACTATGAGATTTACGAGAATGATTTCTTCAAACAGGATTGGAGGAGTCGCGGCAAGGTTCAGATCTTTCAGTACATATTCGTGAAGTGGTTGCTGTGTTTTTTGATTGGTTTAATCGTTAGTCTTATTGGGTTCTGCAACAATCTCGCTGTCGAGAACCTCGCCGGCGTCAAATTCGTCATCACGTCGAATATGATGCTTGTAAAGAGGTATGGAATGGCTTTTCTTGTCTTCTTCTCTTCCAATTTTGTTCTCACTCTGTTTGCCTCGATCATCACGGCTTTTATAGCTCCGGCAGCAGCCGGTTCGGGCATTCCGGAAGTGAAGGCTTACTTGAATGGTGTGGATGCACCAGGAATATTTACTCTGAAAACTCTACTTGTTAAGATTGTTGGTAGCATTACAGCCGTGTCATCATCTCTTCTTATTGGGAAGGCTGGGCCCATGGTCCATACTGGTGCATGTGTGGCAGCATTGCTGGGTCAGGGTGGGTCTAGGAAATATGGTTTAACTTGGAGATGGCTACGCTACTTCAAGAATGATAGAGACCGACGAGATTTTGTAACATGTGGATCAGCTGCTGGAATTGCTGCTTCTTTCCGTGCTCCTGTTGGTGGTGTGTTGTTTAGTCTTGAAGAAATGGCATCTTGGTGGAGAAGTGCCCTTCTATGGAGATGTTTCTTCACAACAGCAGTAGTTGCAATTATGCTTCGGGCTCTGATTGATGTTTGCTTAAGTGGAAAATGTGGCCTATTTGGTACAGGGGGTTTGATAATGTTTGACGTCACCTCACAAAATACTACATATCACATAAAGGATGTGCCTCCTGTGCTTGTTCTAGGAGTTATAGGGGGTCTGTTGGGAAGTTTATATAATTTTCTTCTTGAGAAGGTCCTCCGAATTTACAGTTATATTTATGGGAAAAAGCCTATTTACAAAATAATTCTTGCTTGCTCAATCTCTGTTTTCACATCTTGTCTTCTATTTGGATTACCATGGCTTGCATCCTGCCAACCTTGCCCAATTGATGCATCAGAAGCTTGTCCTACAATAGGCCGGTCTGGTAACTACAAGAAGTTCCAGTGTCCTCCTGGTCACTACAATGATCTAGCCAGTCTTATTTTCAACACAAATGATGATGCCATAAAAAATCTTTTCAGCAAAGACACTGATTCGGAGTTCCAATACTCATCAATTCTTATATTTTTTGCCACCTGCTTTTTTCTCAGTATCTTTAGCTATGGTATTGTGGCTCCTGCGGGTCTATTTGTACCTGTTATTGTGACAGGTGCATCTTATGGACGTTTCGTTGGAATGTTAGTTGGTTCACACTCGAATCTTAACCACGGCCTCTTTGCTGTGCTGGGCGCTGCATCTCTTCTTGGTGGATCTATGAGGATGACAGTTTCCTTGTGTGTCATTATCCTAGAACTGACCAATAATCTCTTATTACTTCCCCTGATAATGGTGGTTCTTCTTGTTTCCAAAACTGTAGCTGACGCTTTTAATGGAAATGTTTATGACATTATTATGAAATTGAAGGGATTTCCTTACTTAGAAGCACATGCCGAGCCATACATGAGGCAGCTGACAGTTGAGGATGTAGTCACGGGTCCACTTCAGCTCTTTAATGTCATTGAGAAGGTTGAAAATATAGTACATGTTCTCAGAACTACAGGACATCATGGATTCCCTGTGATTGATGAACGTTCACATTCTGAATCACCAGTTTTGTTTGGTTTAGTCCTCCGTGCCCATCTTATTGTATTGCTTAGGAAGAAAGCTTTCTTAACCACTGCTGTTCGAGCAGACAGTGATGCCTTTAGGCACTTCTCAGCTATGGATTTCACAAAGAGGGGATCAGGCAATGGTGACAAGATAGAGGATATAGAACTGACCGAAGAAGAGATGGAGATGTTCATAGATTTGCATCCATTTTGCAATTCTTCGCCATATACTGTTGTGGAGACAATGTCATTAGCAAAGGCTCTCATACTTTTCCGAGAAGTTGGCTTAAGACATCTGCTGGTGATCCCCAAGATCTCTAATAGGTCTCCAGTAGTGGGTATATTGACGAGACACGATTTTATGCCAGAACATATTCTGGGTGTGCATCCTCTGCTGGTAAGGAGCAGGTGGAAAAGAATAAGATTTCAGCTTCCTCGTTTTCTAAAACTCTTTTGA 2319 43.04 MSAQPNADEESQAQPLLDPSLHRSLSNVTSQVAIVGSNVCPIESLDYEIYENDFFKQDWRSRGKVQIFQYIFVKWLLCFLIGLIVSLIGFCNNLAVENLAGVKFVITSNMMLVKRYGMAFLVFFSSNFVLTLFASIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFTLKTLLVKIVGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSRKYGLTWRWLRYFKNDRDRRDFVTCGSAAGIAASFRAPVGGVLFSLEEMASWWRSALLWRCFFTTAVVAIMLRALIDVCLSGKCGLFGTGGLIMFDVTSQNTTYHIKDVPPVLVLGVIGGLLGSLYNFLLEKVLRIYSYIYGKKPIYKIILACSISVFTSCLLFGLPWLASCQPCPIDASEACPTIGRSGNYKKFQCPPGHYNDLASLIFNTNDDAIKNLFSKDTDSEFQYSSILIFFATCFFLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLVGSHSNLNHGLFAVLGAASLLGGSMRMTVSLCVIILELTNNLLLLPLIMVVLLVSKTVADAFNGNVYDIIMKLKGFPYLEAHAEPYMRQLTVEDVVTGPLQLFNVIEKVENIVHVLRTTGHHGFPVIDERSHSESPVLFGLVLRAHLIVLLRKKAFLTTAVRADSDAFRHFSAMDFTKRGSGNGDKIEDIELTEEEMEMFIDLHPFCNSSPYTVVETMSLAKALILFREVGLRHLLVIPKISNRSPVVGILTRHDFMPEHILGVHPLLVRSRWKRIRFQLPRFLKLF* 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5810507 5819805 - Vvi11g544 Vvi11g544 771985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g544 772 SUPERFAMILY CBS-domain pair 568 742 IPR046342 -
Vvi11g544 772 CDD ClC_6_like 43 564 - -
Vvi11g544 772 ProSiteProfiles CBS domain profile. 692 752 IPR000644 -
Vvi11g544 772 Gene3D Clc chloride channel 66 563 - -
Vvi11g544 772 PANTHER CHLORIDE CHANNEL PROTEIN 6 764 - -
Vvi11g544 772 SUPERFAMILY Clc chloride channel 51 567 IPR014743 -
Vvi11g544 772 Gene3D - 564 744 IPR046342 -
Vvi11g544 772 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 744 - -
Vvi11g544 772 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g544 772 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g544 772 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g544 772 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g544 772 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi11g544 772 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi11g544 772 Pfam CBS domain 691 741 IPR000644 -
Vvi11g544 772 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 6 764 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g544 K05016 - vvi:100255837 1461.43