Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g58 ATGACGTGGCTATACAAGTTTTATTTCATATTTTTTTTTTATAATAATCATATTTATCGAGGAATAACCCTGACCTCGCAGCAGAGACGAGGAATTAGGGTTGCGAGCTTTACTGAGTTCAAATCAATGGCGGATTCCAACTCCAAACATCAGGATTCTCTGCAGTCGATATGTTATAAGCGCGGGTCACTCCAACTGCTCGATCAGAGAAAGCTTCCTCTGGAAACTGTCTACTTGGAAATTAAAGGCGCAGATGATGGATGGCATGCAATAAGAGATATGGTGGTTCGTGGGGCACCCGCAATTGCAATAGCAGCAGCCCTCTCCCTGGCTGTGGAAGTATCCAACTTAGAGGATTTTATTGGGACATCTGATGATGCAGCATCTTTCCTTAACAGCAAATTGGACTATCTTGTTACTAGCCGACCTACTGCTGTGAATCTTTCAGATGCTGTAACAAAACTTAAAGGAGTAATATCAAATGCTGCTGCCACTGCTTTTGAAGCCATGAGTGTTTTTCAGGCTTTTCTAGAGGCTGCTGAAGACATGCTTAGGGAGGATGTTGCTGCAAACAGAGCAATTGGGTTGTATGGAGCAAGTTTTCTTCAAAGCCATATAAAAGACTCTAAGAATCTGTCTATTTTGACACATTGCAACACTGGAAGTCTTGCAACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCATGCTGAAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTCTTATAGCAGACTCTGCTGCAGCTGCATTAATGCAGGCTGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCATCACCATATTCCATTCTTTGTGGCTGCACCCTTGACTTCCATTGATTTAACCCTTTCTTCGGGACAAGAAATTGTTATAGAGGAAAGATCCCCAAAGGAATTGTTGAACTCGCGTGGAGGACTCGGGGAACAGGTTGCTGCATCTGGAATTTGTGTTTGGAACCCTGCTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACAATGCAACCAGTCACTGCTGTAAATAA 1257 43.68 MTWLYKFYFIFFFYNNHIYRGITLTSQQRRGIRVASFTEFKSMADSNSKHQDSLQSICYKRGSLQLLDQRKLPLETVYLEIKGADDGWHAIRDMVVRGAPAIAIAAALSLAVEVSNLEDFIGTSDDAASFLNSKLDYLVTSRPTAVNLSDAVTKLKGVISNAAATAFEAMSVFQAFLEAAEDMLREDVAANRAIGLYGASFLQSHIKDSKNLSILTHCNTGSLATAGYGTALGVIRSVHAEGILLRAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMQAGRVDAVIVGADRVAANGDTANKIGTYSLALSAKHHHIPFFVAAPLTSIDLTLSSGQEIVIEERSPKELLNSRGGLGEQVAASGICVWNPAFDVTPADLIAGIITEKGVITKTGDVFDIKDFIHNATSHCCK* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 753903 759768 + Vvi11g58 Vvi11g58 771499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g58 418 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 55 398 IPR005251 -
Vvi11g58 418 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 83 398 IPR011559 GO:0044249
Vvi11g58 418 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 54 405 IPR005251 -
Vvi11g58 418 Pfam Initiation factor 2 subunit family 96 397 IPR000649 GO:0044237
Vvi11g58 418 Gene3D - 52 244 IPR027363 -
Vvi11g58 418 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 52 410 - -
Vvi11g58 418 Gene3D - 245 409 IPR042529 -
Vvi11g58 418 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 52 410 - -
Vvi11g58 418 SUPERFAMILY NagB/RpiA/CoA transferase-like 51 400 IPR037171 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g58 K08963 - vvi:100268031 702.205