Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g589 ATGTGTGTCAAGGACTCTGAACAGGTCTCTGAAGAAATGGAGAATTCTAGTCTAAGTGATCATGATGCCACCAAGTTGGGTAATTCATTTCCGCTGCAAAGCATTTCAGAAGATAAAGTGGCTTCAGACAAAGAACAGAACCTGGTATCCATCTTTGTCCCTGCTCTTCGATCAGGGGAGTGGTCTGATATTGGGGGTCGGCCCTATATGGAGGACACTCACATATGCATCAGTGACCTGGCTAAGAAGTTCAATCATAATTTGCTTGATAAGGAAGCTATATCCTTCTATGGTGTATTTGATGGTCATGGAGGAAATGCTGCAGCGCAGTTTGTCCGTGACCACTTGCCAAGGGTCATTGTCGAGGACGCTGATTTCCCCTTAGCACTGGAGAAGGTAGTTATGAGGTCATTTATAGAGACAGATGCTGAATTCGCAAAGACATGCTCTCTTGAGTCTTCCCTGTCTTCTGGCACAACTGCACTTACAGCGATGATATTTGGGAGGTCTTTGCTTGTGGCAAATGCTGGGGATTGCCGGGCAGTGCTGTCACAGCTCGGAGTGGCTATAGAAATGTCGAAAGATCACAGGCCATGCTGCACAAGAGAAAGGAGCAGGATTGAGTCCCTGGGTGGATACATTGATGATGGGTATCTAAATGGTCAGATATCCGTCACCCGTGCGCTTGGTGATTGGCACCTTGAAGGACTGAAAGATATTGGTGAAAGGGGTGGACCTTTGAGTGCTGAACCAGAACTTAAACTAATGACACTAACCAAAGAACATGAGTTCTTAATCATAGGCAGTGACGGAATCTGGGAGGTGTTTAGGAGCCAAAATGCAGTAGATTTTGTCCGGAGGAGACTCCAAGAGCACAACGATGTGAAGCTATGCTGCAAGGAAGTAGTTGAGGAAGCAATTAAGCGTGGAGCAACAGACAATCTCACGGTTGTGGTAGTGAGTTTTCACTCTGAGCCACCACCACTGAAGGAGGTGGTACGAAGGGCAAGAGTGACAAGAAGCATTTCAGCAGAGGGGCTTCAAAATCTCAGATCTCTGTTAGAAGGATAG 1071 46.59 MCVKDSEQVSEEMENSSLSDHDATKLGNSFPLQSISEDKVASDKEQNLVSIFVPALRSGEWSDIGGRPYMEDTHICISDLAKKFNHNLLDKEAISFYGVFDGHGGNAAAQFVRDHLPRVIVEDADFPLALEKVVMRSFIETDAEFAKTCSLESSLSSGTTALTAMIFGRSLLVANAGDCRAVLSQLGVAIEMSKDHRPCCTRERSRIESLGGYIDDGYLNGQISVTRALGDWHLEGLKDIGERGGPLSAEPELKLMTLTKEHEFLIIGSDGIWEVFRSQNAVDFVRRRLQEHNDVKLCCKEVVEEAIKRGATDNLTVVVVSFHSEPPPLKEVVRRARVTRSISAEGLQNLRSLLEG* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6467999 6472819 + Vvi11g589 Vvi11g589 772030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g589 356 MobiDBLite consensus disorder prediction 1 19 - -
Vvi11g589 356 Gene3D - 34 326 IPR036457 -
Vvi11g589 356 MobiDBLite consensus disorder prediction 1 25 - -
Vvi11g589 356 Pfam Protein phosphatase 2C 69 314 IPR001932 -
Vvi11g589 356 ProSitePatterns PPM-type phosphatase domain signature. 96 104 IPR000222 GO:0043169
Vvi11g589 356 PANTHER PROTEIN PHOSPHATASE 2C 9 343 IPR015655 GO:0004722|GO:0006470
Vvi11g589 356 SMART PP2C_4 47 320 IPR001932 -
Vvi11g589 356 ProSiteProfiles PPM-type phosphatase domain profile. 57 322 IPR001932 -
Vvi11g589 356 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 9 343 - -
Vvi11g589 356 SUPERFAMILY PP2C-like 48 324 IPR036457 -
Vvi11g589 356 CDD PP2Cc 57 322 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g623 Vvi11g589 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13745 PF00481 PP2C 4.60E-66 CL0238 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g589 K14803 - vvi:100243121 698.353