Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g596 ATGAATGAGCGAAGGTGGCACTCAAGATCGGAGATATGGGAAAGGCTTCGTGGTGGGCTTGATGAGAGTAGTCGGCGAACTACTACTTGTCCAACAGGCCTCCACCCTGATGGTATGTGCTCCTGCGATTCCTTCTTGATGGCTGAAGAATCTAGCACTCGAGCAAGCATCTCCCGAATAGTCATGCTAGCTGAAGCCTTATTTGAGGTCTTGGATGAAATTCACCGCCAACCTGTCTCACTGGCACTGTCTATGGTATCACTCCCTGCCCCAGAGTCGGTTGTTGACTCTTTTCCTCTCAAGAATCACAAAAAGGCCGACACAGCTCAGAGTGGGGAGGATGTGGCACAGTGCTACATTTGTCTGGCTGAGTATGAGGAAGGTGATAAAATTAGAGTTCTTCCCTGCCACCATGAGTATCATATGTCATGTGTTGATAAATGGCTCAAAGAAATACATGGGGTGTGCCCACTATGCCGCGGAGATGTTCGTGAGGGCCTTACTGGTGGTTCTGTCTCAAACGGAGAGACCCCCTCTCTTTGA 543 49.54 MNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSFLMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKKADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLTGGSVSNGETPSL* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6535363 6542360 + Vvi11g596 Vvi11g596 772037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g596 180 Pfam Ring finger domain 117 160 IPR001841 -
Vvi11g596 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 165 IPR013083 -
Vvi11g596 180 SMART ring_2 118 159 IPR001841 -
Vvi11g596 180 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 178 - -
Vvi11g596 180 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vvi11g596 180 SUPERFAMILY RING/U-box 117 165 - -
Vvi11g596 180 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 178 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g596 - - vvi:100263653 375.941