Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g596 ATGAATGAGCGAAGGTGGCACTCAAGATCGGAGATATGGGAAAGGCTTCGTGGTGGGCTTGATGAGAGTAGTCGGCGAACTACTACTTGTCCAACAGGCCTCCACCCTGATGGTATGTGCTCCTGCGATTCCTTCTTGATGGCTGAAGAATCTAGCACTCGAGCAAGCATCTCCCGAATAGTCATGCTAGCTGAAGCCTTATTTGAGGTCTTGGATGAAATTCACCGCCAACCTGTCTCACTGGCACTGTCTATGGTATCACTCCCTGCCCCAGAGTCGGTTGTTGACTCTTTTCCTCTCAAGAATCACAAAAAGGCCGACACAGCTCAGAGTGGGGAGGATGTGGCACAGTGCTACATTTGTCTGGCTGAGTATGAGGAAGGTGATAAAATTAGAGTTCTTCCCTGCCACCATGAGTATCATATGTCATGTGTTGATAAATGGCTCAAAGAAATACATGGGGTGTGCCCACTATGCCGCGGAGATGTTCGTGAGGGCCTTACTGGTGGTTCTGTCTCAAACGGAGAGACCCCCTCTCTTTGA 543 49.54 MNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSFLMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKKADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLTGGSVSNGETPSL* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6535363 6542360 + Vvi11g596 Vvi11g596 772037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g596 180 Pfam Ring finger domain 117 160 IPR001841 -
Vvi11g596 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 165 IPR013083 -
Vvi11g596 180 SMART ring_2 118 159 IPR001841 -
Vvi11g596 180 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 178 - -
Vvi11g596 180 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vvi11g596 180 SUPERFAMILY RING/U-box 117 165 - -
Vvi11g596 180 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g596 - - - vvi:100263653 375.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g596 . . . . . . . . Cmo10g00532 Cmo11g00494 . . . . . . Cpe18g00538 . . . . . . . . . . . . . . . . . . Lsi06g01060 . . Cme02g01104 . . . . . . . . . . . Cma10g00498 Cma11g00498 Car10g00460 Car11g00383 . . . . . . . . . Cla06g01190 Cam06g1335 Cec06g1376 Cco06g1382 Clacu06g1282 Cmu06g1251 Cre06g2066 . Csa01g01837 Chy02g02078 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g1195 . 23 484 C3H Transcription Factor Family AT2G31510 79.7 5.5e-232 800.4
Vvi5g1195 . 8 468 C3H Transcription Factor Family AT2G31770 60.3 5.8e-174 607.8
Vvi5g1195 . 6 468 C3H Transcription Factor Family AT2G31760 59.1 3.7e-170 595.1
Vvi14g991 ECH 1 224 C3H Transcription Factor Family AT3G02290 62.4 9.0e-76 280.4
Vvi11g418 . 76 439 C3H Transcription Factor Family AT1G11020 65.3 1.7e-128 456.1
Vvi2g12 . 38 226 C3H Transcription Factor Family AT5G41350 51.0 1.4e-46 183.3
Vvi9g1050 . 56 217 C3H Transcription Factor Family AT1G50440 74.1 2.4e-68 255.8
Vvi16g143 . 1 341 C3H Transcription Factor Family AT3G16090 62.2 2.5e-112 402.9
Vvi18g1538 . 32 187 C3H Transcription Factor Family AT1G22510 68.6 1.7e-57 219.5
Vvi14g991 ECH 1 223 C3H Transcription Factor Family AT5G38895 59.7 2.7e-73 272.7
Vvi7g540 ECH 21 213 C3H Transcription Factor Family AT1G04360 53.9 5.5e-54 208.8
Vvi4g910 . 14 107 C3H Transcription Factor Family AT1G19310 73.4 1.4e-41 166.8
Vvi18g1538 . 36 187 C3H Transcription Factor Family AT1G72175 68.4 3.4e-55 211.5
Vvi1g922 . 115 288 C3H Transcription Factor Family AT1G26800 58.0 5.0e-54 208.0
Vvi15g801 . 1 182 C3H Transcription Factor Family AT4G00335 50.5 1.1e-52 203.4
Vvi5g854 . 8655 8785 C3H Transcription Factor Family AT1G04790 68.2 2.8e-47 187.2
Vvi7g1123 . 1 322 C3H Transcription Factor Family AT2G22120 84.9 4.7e-164 574.3
Vvi13g938 . 1 174 C3H Transcription Factor Family AT5G07040 59.8 4.0e-43 171.4
Vvi17g363 ECH 1 388 C3H Transcription Factor Family AT1G18470 78.7 2.2e-181 632.1
Vvi1g256 ECH 1 387 C3H Transcription Factor Family AT1G18470 71.8 2.0e-161 565.8
Vvi3g981 ECH 45 168 C3H Transcription Factor Family AT4G33565 59.5 5.3e-38 155.6
Vvi5g1195 . 8 468 C3H Transcription Factor Family AT2G31770 60.3 5.8e-174 607.8
Vvi5g1195 . 6 468 C3H Transcription Factor Family AT2G31760 59.1 3.7e-170 595.1
Vvi7g29 ECH 2 349 C3H Transcription Factor Family AT2G30580 54.2 3.2e-90 328.9
Vvi14g518 ECH 5 345 C3H Transcription Factor Family AT2G30580 50.9 4.2e-82 302.0
Vvi19g714 . 1 272 C3H Transcription Factor Family AT5G55970 69.3 2.0e-105 379.4
Vvi19g714 . 44 344 C3H Transcription Factor Family AT4G26580 70.0 8.3e-123 437.2
Vvi18g1752 . 4 145 C3H Transcription Factor Family AT4G10150 59.4 1.2e-46 183.7
Vvi13g1159 ECH 1 248 C3H Transcription Factor Family AT3G63530 54.4 1.2e-73 273.5
Vvi8g33 ECH 1 419 C3H Transcription Factor Family AT5G01960 69.4 8.8e-162 567.0
Vvi6g786 ECH 14 418 C3H Transcription Factor Family AT5G01960 70.6 1.2e-161 566.6
Vvi6g1009 . 1 242 C3H Transcription Factor Family AT5G19430 53.8 2.4e-66 249.2
Vvi2g939 . 97 490 C3H Transcription Factor Family AT5G45290 54.5 3.0e-98 356.3
Vvi11g596 . 49 163 C3H Transcription Factor Family AT5G45290 62.3 1.5e-36 151.4
Vvi6g1009 . 20 242 C3H Transcription Factor Family AT5G12310 58.1 3.3e-63 238.8
Vvi11g969 . 46 393 C3H Transcription Factor Family AT5G05810 52.7 3.0e-90 329.3
Vvi13g418 ECH 24 201 C3H Transcription Factor Family AT5G05830 61.5 1.8e-56 216.1
Vvi8g828 ECH 2 161 C3H Transcription Factor Family AT5G05830 62.3 1.5e-53 206.5
Vvi14g991 ECH 1 224 C3H Transcription Factor Family AT5G15790 60.8 4.9e-74 274.6
Vvi6g481 ECH 1 280 C3H Transcription Factor Family AT3G55530 75.1 9.2e-112 400.2
Vvi13g322 ECH 1 276 C3H Transcription Factor Family AT3G55530 76.9 3.5e-111 398.3
Vvi7g158 . 1 273 C3H Transcription Factor Family AT1G63900 74.7 1.8e-118 422.5
Vvi15g225 . 1 191 C3H Transcription Factor Family AT2G44580 64.4 3.7e-66 249.2
Vvi15g224 . 10 151 C3H Transcription Factor Family AT2G44580 64.1 4.7e-45 179.1
Vvi17g577 . 70 217 C3H Transcription Factor Family AT1G74410 58.1 3.7e-50 195.3
Vvi4g190 . 2 294 C3H Transcription Factor Family AT5G20910 65.5 4.7e-104 374.8
Vvi16g143 . 19 328 C3H Transcription Factor Family AT1G65040 63.8 5.1e-106 381.3
Vvi4g910 . 17 111 C3H Transcription Factor Family AT2G23780 78.9 2.3e-44 176.0
Vvi1g498 . 1 268 C3H Transcription Factor Family AT1G68070 62.0 1.6e-92 336.7
Vvi7g1220 . 9 174 C3H Transcription Factor Family AT1G76410 60.1 4.0e-50 194.9
Vvi9g412 . 18 384 C3H Transcription Factor Family AT1G80400 55.8 1.6e-115 413.3
Vvi4g371 ECH 11 390 C3H Transcription Factor Family AT1G80400 57.2 1.0e-114 410.6
Vvi11g392 ECH 77 396 C3H Transcription Factor Family AT1G80400 59.1 3.6e-104 375.6
Vvi3g391 ECH 3 159 C3H Transcription Factor Family AT2G15530 68.1 5.5e-60 229.6
Vvi18g743 ECH 16 170 C3H Transcription Factor Family AT2G15530 63.9 8.2e-56 215.7
Vvi7g1220 . 1 153 C3H Transcription Factor Family AT2G17450 58.2 2.0e-41 166.0
Vvi5g1195 . 23 484 C3H Transcription Factor Family AT2G31510 79.7 5.5e-232 800.4
Vvi8g1287 ECH 1 306 C3H Transcription Factor Family AT2G41980 81.0 1.1e-150 529.6
Vvi6g108 ECH 1 309 C3H Transcription Factor Family AT2G41980 76.1 4.6e-144 507.7
Vvi2g154 ECH 45 302 C3H Transcription Factor Family AT2G41980 81.0 7.1e-129 457.2
Vvi13g1005 . 48 306 C3H Transcription Factor Family AT2G41980 79.9 5.1e-127 451.1
Vvi16g1041 ECH 1 242 C3H Transcription Factor Family AT2G41980 81.4 1.4e-121 433.0
Vvi15g685 ECH 5 267 C3H Transcription Factor Family AT2G41980 52.7 1.2e-80 297.0
Vvi5g431 ECH 100 349 C3H Transcription Factor Family AT3G06140 67.3 2.1e-92 336.3
Vvi14g241 ECH 2 243 C3H Transcription Factor Family AT3G06140 58.0 4.0e-75 278.9
Vvi6g278 ECH 64 345 C3H Transcription Factor Family AT3G09770 52.7 2.0e-71 266.5
Vvi17g735 . 58 273 C3H Transcription Factor Family AT3G47990 73.9 1.6e-96 349.7
Vvi3g981 ECH 7 149 C3H Transcription Factor Family AT1G72220 58.7 1.2e-41 167.9
Vvi7g1220 . 12 183 C3H Transcription Factor Family AT1G20823 63.2 1.2e-52 203.4
Vvi17g363 ECH 1 467 C3H Transcription Factor Family AT1G73950 71.8 9.3e-199 689.9
Vvi1g256 ECH 1 466 C3H Transcription Factor Family AT1G73950 65.0 1.2e-177 619.8
Vvi18g1752 . 1 188 C3H Transcription Factor Family AT1G33480 56.0 3.4e-47 185.7
Vvi12g446 . 1 327 C3H Transcription Factor Family AT1G04990 53.2 9.9e-46 181.4
Vvi15g565 . 2 214 C3H Transcription Factor Family AT2G01735 51.4 2.9e-51 199.1
Vvi1g498 . 1 163 C3H Transcription Factor Family AT2G01735 57.1 5.8e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010137 0 0 0 0 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 32