Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g596 | ATGAATGAGCGAAGGTGGCACTCAAGATCGGAGATATGGGAAAGGCTTCGTGGTGGGCTTGATGAGAGTAGTCGGCGAACTACTACTTGTCCAACAGGCCTCCACCCTGATGGTATGTGCTCCTGCGATTCCTTCTTGATGGCTGAAGAATCTAGCACTCGAGCAAGCATCTCCCGAATAGTCATGCTAGCTGAAGCCTTATTTGAGGTCTTGGATGAAATTCACCGCCAACCTGTCTCACTGGCACTGTCTATGGTATCACTCCCTGCCCCAGAGTCGGTTGTTGACTCTTTTCCTCTCAAGAATCACAAAAAGGCCGACACAGCTCAGAGTGGGGAGGATGTGGCACAGTGCTACATTTGTCTGGCTGAGTATGAGGAAGGTGATAAAATTAGAGTTCTTCCCTGCCACCATGAGTATCATATGTCATGTGTTGATAAATGGCTCAAAGAAATACATGGGGTGTGCCCACTATGCCGCGGAGATGTTCGTGAGGGCCTTACTGGTGGTTCTGTCTCAAACGGAGAGACCCCCTCTCTTTGA | 543 | 49.54 | MNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSFLMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKKADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLTGGSVSNGETPSL* | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6535363 | 6542360 | + | Vvi11g596 | Vvi11g596 | 772037 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g596 | 180 | Pfam | Ring finger domain | 117 | 160 | IPR001841 | - | |
Vvi11g596 | 180 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 165 | IPR013083 | - | |
Vvi11g596 | 180 | SMART | ring_2 | 118 | 159 | IPR001841 | - | |
Vvi11g596 | 180 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 178 | - | - | |
Vvi11g596 | 180 | ProSiteProfiles | Zinc finger RING-type profile. | 118 | 160 | IPR001841 | - | |
Vvi11g596 | 180 | SUPERFAMILY | RING/U-box | 117 | 165 | - | - | |
Vvi11g596 | 180 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 178 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g596 | - | - | vvi:100263653 | 375.941 |