Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g600 | ATGGTTCCTACAGATATCAGAGTTGTCTCATCAAATGGTAATACACCTTATTTATCCCCGTCTAACAGAATTGGAGATGTTCAAGATTCCTCAAACTCACTCTTCAGCAGCCAGGATCCTTGGAATTTACGGCATGATATTCATTTCCCCCCTCCTAGACCTAACAAAATTACAATAAAAAATGAAGCCTTTAGTATTAGGGAACCATTTGGTGAAAATGGTACGAGCGATAGTGGGGATATAAATACAGATGTGCAATTGGAGGATGGAGCCCACCAGCCATTTTCCAATTTGGATAAGGATTTCAATTCAGAGCATAGTTGGTCTGCGAAAGGCTCAGGAGAGGAAGTGATCAAACAAGAACTTCAGGCGATTGCTGAGGGTGTTGCTGCTTCTGTTCTCCACTCGACTACATCTAATCCTGAAATTTCTATACACGAGAAAAATGAGCCTCTTTCTTTGTCCAATAAAGATATAGAGCTTCAAGATAGCGATTTGGAAATGCAGCATAAAAGTAAAGTTGAGGACAATATAAACAAAGTGCCAGAAAAAATTAATATGGGCTTCCCAGTGTCAGATGGCATAGGTCGCTTGCAGATCATAAAAAACAGTGACCTTGAAGAGCTCCGAGAATTGGGTTCTGGCACCTTTGGTACTGTTTATCATGGAAAATGGAGGGGCACTGACGTTGCAATCAAACGAATCAATGACAGGTGCTTTGCTGGGAAGCCTTCAGAACAAGAACGTATGAGAGATGACTTCTGGAATGAGGCAATCAAGCTTGCTGATTTGCATCATCCAAATGTGGTAGCTTTCTATGGTGTTGTTCTTGATGGCCCTGGAGGCTCAGTTGCAACTGTTACAGAGTATATGGTTAATGGTTCTTTAAGAAATTCTCTGCAGAAGAATGAAAAGAATCTTGATAAGCGTAAGCGTCTCTTGATTGCCATGGATGTAGCCTTTGGAATGGAGTACTTGCATGGTAAGAATATAGTGCACTTCGACTTGAAAAGTGATAACTTACTTGTCAATCTTCGAGATCCTCACCGCCCAATATGCAAGGTTGGTGATTTGGGCTTATCAAAGGTGAAATGCCAGACACTGATCTCTGGTGGTGTGCGAGGGACACTTCCTTGGATGGCTCCAGAGCTACTGAATGGCAGCAGTAGCCTTGTGTCTGAGAAGGTTGATGTGTTTTCATTCGGTATTGTGATGTGGGAACTTCTTACTGGAGAAGAACCATATGCAGATCTGCATTATGGGGCAATCATTGGTGGTATTGTGAGCAACACCTTGCGGCCATCTGTACCTGAGTTTTGTGACCCAGAATGGAGAGCTCTGATGGAGAGATGTTGGTCTTCAGAACCATCAGAGAGGCCAAGCTTCACCGAAATTGCAAACCAGTTGCGATCTATGGCGGCTAAGATTCCTCCAAAAGGACAAATATCACAGCCCCAGGTTCAAAAATGA | 1470 | 42.86 | MVPTDIRVVSSNGNTPYLSPSNRIGDVQDSSNSLFSSQDPWNLRHDIHFPPPRPNKITIKNEAFSIREPFGENGTSDSGDINTDVQLEDGAHQPFSNLDKDFNSEHSWSAKGSGEEVIKQELQAIAEGVAASVLHSTTSNPEISIHEKNEPLSLSNKDIELQDSDLEMQHKSKVEDNINKVPEKINMGFPVSDGIGRLQIIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNSLQKNEKNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPSVPEFCDPEWRALMERCWSSEPSERPSFTEIANQLRSMAAKIPPKGQISQPQVQK* | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6576323 | 6581862 | + | Vvi11g600 | Vvi11g600 | 772041 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g600 | 489 | Pfam | Protein tyrosine and serine/threonine kinase | 207 | 469 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | ProSiteProfiles | Protein kinase domain profile. | 206 | 473 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g600 | 489 | ProSitePatterns | Protein kinases ATP-binding region signature. | 212 | 243 | IPR017441 | GO:0005524 | |
Vvi11g600 | 489 | SMART | serkin_6 | 206 | 472 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi11g600 | 489 | PRINTS | Tyrosine kinase catalytic domain signature | 288 | 301 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | PRINTS | Tyrosine kinase catalytic domain signature | 325 | 343 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | PRINTS | Tyrosine kinase catalytic domain signature | 396 | 418 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | PRINTS | Tyrosine kinase catalytic domain signature | 440 | 462 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | Gene3D | Phosphorylase Kinase; domain 1 | 199 | 293 | - | - | |
Vvi11g600 | 489 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 331 | 343 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi11g600 | 489 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 10 | 476 | - | - | |
Vvi11g600 | 489 | MobiDBLite | consensus disorder prediction | 9 | 35 | - | - | |
Vvi11g600 | 489 | CDD | STKc_MAP3K-like | 212 | 469 | - | - | |
Vvi11g600 | 489 | SUPERFAMILY | Protein kinase-like (PK-like) | 198 | 468 | IPR011009 | - | |
Vvi11g600 | 489 | Gene3D | Transferase(Phosphotransferase) domain 1 | 294 | 488 | - | - | |
Vvi11g600 | 489 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 10 | 476 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76057 | PF07714 | PK_Tyr_Ser-Thr | 3.90E-61 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g600 | - | - | vvi:100251651 | 994.956 |