Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g600 ATGGTTCCTACAGATATCAGAGTTGTCTCATCAAATGGTAATACACCTTATTTATCCCCGTCTAACAGAATTGGAGATGTTCAAGATTCCTCAAACTCACTCTTCAGCAGCCAGGATCCTTGGAATTTACGGCATGATATTCATTTCCCCCCTCCTAGACCTAACAAAATTACAATAAAAAATGAAGCCTTTAGTATTAGGGAACCATTTGGTGAAAATGGTACGAGCGATAGTGGGGATATAAATACAGATGTGCAATTGGAGGATGGAGCCCACCAGCCATTTTCCAATTTGGATAAGGATTTCAATTCAGAGCATAGTTGGTCTGCGAAAGGCTCAGGAGAGGAAGTGATCAAACAAGAACTTCAGGCGATTGCTGAGGGTGTTGCTGCTTCTGTTCTCCACTCGACTACATCTAATCCTGAAATTTCTATACACGAGAAAAATGAGCCTCTTTCTTTGTCCAATAAAGATATAGAGCTTCAAGATAGCGATTTGGAAATGCAGCATAAAAGTAAAGTTGAGGACAATATAAACAAAGTGCCAGAAAAAATTAATATGGGCTTCCCAGTGTCAGATGGCATAGGTCGCTTGCAGATCATAAAAAACAGTGACCTTGAAGAGCTCCGAGAATTGGGTTCTGGCACCTTTGGTACTGTTTATCATGGAAAATGGAGGGGCACTGACGTTGCAATCAAACGAATCAATGACAGGTGCTTTGCTGGGAAGCCTTCAGAACAAGAACGTATGAGAGATGACTTCTGGAATGAGGCAATCAAGCTTGCTGATTTGCATCATCCAAATGTGGTAGCTTTCTATGGTGTTGTTCTTGATGGCCCTGGAGGCTCAGTTGCAACTGTTACAGAGTATATGGTTAATGGTTCTTTAAGAAATTCTCTGCAGAAGAATGAAAAGAATCTTGATAAGCGTAAGCGTCTCTTGATTGCCATGGATGTAGCCTTTGGAATGGAGTACTTGCATGGTAAGAATATAGTGCACTTCGACTTGAAAAGTGATAACTTACTTGTCAATCTTCGAGATCCTCACCGCCCAATATGCAAGGTTGGTGATTTGGGCTTATCAAAGGTGAAATGCCAGACACTGATCTCTGGTGGTGTGCGAGGGACACTTCCTTGGATGGCTCCAGAGCTACTGAATGGCAGCAGTAGCCTTGTGTCTGAGAAGGTTGATGTGTTTTCATTCGGTATTGTGATGTGGGAACTTCTTACTGGAGAAGAACCATATGCAGATCTGCATTATGGGGCAATCATTGGTGGTATTGTGAGCAACACCTTGCGGCCATCTGTACCTGAGTTTTGTGACCCAGAATGGAGAGCTCTGATGGAGAGATGTTGGTCTTCAGAACCATCAGAGAGGCCAAGCTTCACCGAAATTGCAAACCAGTTGCGATCTATGGCGGCTAAGATTCCTCCAAAAGGACAAATATCACAGCCCCAGGTTCAAAAATGA 1470 42.86 MVPTDIRVVSSNGNTPYLSPSNRIGDVQDSSNSLFSSQDPWNLRHDIHFPPPRPNKITIKNEAFSIREPFGENGTSDSGDINTDVQLEDGAHQPFSNLDKDFNSEHSWSAKGSGEEVIKQELQAIAEGVAASVLHSTTSNPEISIHEKNEPLSLSNKDIELQDSDLEMQHKSKVEDNINKVPEKINMGFPVSDGIGRLQIIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNSLQKNEKNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPSVPEFCDPEWRALMERCWSSEPSERPSFTEIANQLRSMAAKIPPKGQISQPQVQK* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6576323 6581862 + Vvi11g600 Vvi11g600 772041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g600 489 Pfam Protein tyrosine and serine/threonine kinase 207 469 IPR001245 GO:0004672|GO:0006468
Vvi11g600 489 ProSiteProfiles Protein kinase domain profile. 206 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g600 489 ProSitePatterns Protein kinases ATP-binding region signature. 212 243 IPR017441 GO:0005524
Vvi11g600 489 SMART serkin_6 206 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g600 489 PRINTS Tyrosine kinase catalytic domain signature 288 301 IPR001245 GO:0004672|GO:0006468
Vvi11g600 489 PRINTS Tyrosine kinase catalytic domain signature 325 343 IPR001245 GO:0004672|GO:0006468
Vvi11g600 489 PRINTS Tyrosine kinase catalytic domain signature 396 418 IPR001245 GO:0004672|GO:0006468
Vvi11g600 489 PRINTS Tyrosine kinase catalytic domain signature 440 462 IPR001245 GO:0004672|GO:0006468
Vvi11g600 489 Gene3D Phosphorylase Kinase; domain 1 199 293 - -
Vvi11g600 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Vvi11g600 489 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 10 476 - -
Vvi11g600 489 MobiDBLite consensus disorder prediction 9 35 - -
Vvi11g600 489 CDD STKc_MAP3K-like 212 469 - -
Vvi11g600 489 SUPERFAMILY Protein kinase-like (PK-like) 198 468 IPR011009 -
Vvi11g600 489 Gene3D Transferase(Phosphotransferase) domain 1 294 488 - -
Vvi11g600 489 PANTHER SERINE-THREONINE PROTEIN KINASE 10 476 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76057 PF07714 PK_Tyr_Ser-Thr 3.90E-61 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g600 - - vvi:100251651 994.956