Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g601 ATGGCGTTTCACAACCAGCTCTCCCACGATATGGCTCTCCAGCATTTCACGGACTCGCACTTGACTGAGAACACGGCCGTTTTGCGGGGAATATTGCCGGAGCAGCTAGGCCAGTCGTCTTCCGATGGTGCCGGAAAACCGCCTAGTCACCAGCAGCTGGGAGGAGGAGGCGGCGGCGGCGGCCCGACGTGGCTCAACAACGCAATTCTGCGGCAGCAGAGTCAATACGCCGATGGGAGCTTCCTCCACTTGCAGACGAATTCGGATTCGACGTCCTCTCCGGCGACGGCCACGACGACGACCAACCAGTGGCTCTCGCGATCGATGAGCAACAAGAGAAACGGAGGGAACAATCAGAACCGGGGCGATAACAATGGTGAGGACATGCTGGATTGTGATTCTGGAGGGAATTGGGAAAATGCGAGGTACAAAGCCGATATCTTGGCCCATCCTTTGTATGAACAGTTGCTTTCCGCTCACGTTTCATGCCTCCGAATCGCGACGCCTGTCGACCAGTTGCCGAGGATCGATGCGCAGCTGGCGCAATCTCAGGGCGTTGTAACCAAGTATTCGGTCCTTGCAAATCAGCCTTTGGATGATAAGGAGCTCGATCAGTTCATGACACATTATGTTCTATTGCTGTGTTCATTTAAAGAACAATTGCAACAACACGTCCGTGTTCATGCTATGGAAGCCGTAATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGTTTAACAGGTGTATCACCAGGTGAAGGCACTGGTGCAACAATGTCTGATGATGAAGATGACCAGGCAGATAGTGAGATCAACTTGTTTGATGGAAGTCTGGATGGGCCAGACAGCATGGGGTTTGGCCCTCTTGTTCCAACTGAAACCGAAAGGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAAGAGCTGGAAAACTACCTGGTGACACTACCTCCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGATCAATAACTGGTTCATCAACCAAAGGAAACGGAATTGGCACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAA 1242 50.24 MAFHNQLSHDMALQHFTDSHLTENTAVLRGILPEQLGQSSSDGAGKPPSHQQLGGGGGGGGPTWLNNAILRQQSQYADGSFLHLQTNSDSTSSPATATTTTNQWLSRSMSNKRNGGNNQNRGDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQGVVTKYSVLANQPLDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSEINLFDGSLDGPDSMGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLHLKQINNWFINQRKRNWHSNPSSSAVLKTKRKSNAGEINNDHFL* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6584506 6590529 - Vvi11g601 Vvi11g601 772042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g601 413 Pfam KNOX1 domain 143 184 IPR005540 GO:0003677|GO:0005634
Vvi11g601 413 SMART KNOX2_2 193 248 IPR005541 GO:0003677|GO:0005634
Vvi11g601 413 MobiDBLite consensus disorder prediction 85 131 - -
Vvi11g601 413 Pfam ELK domain 305 326 IPR005539 GO:0003677
Vvi11g601 413 Pfam KNOX2 domain 197 247 IPR005541 GO:0003677|GO:0005634
Vvi11g601 413 ProSiteProfiles 'Homeobox' domain profile. 325 388 IPR001356 GO:0003677
Vvi11g601 413 MobiDBLite consensus disorder prediction 36 65 - -
Vvi11g601 413 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 51 404 - -
Vvi11g601 413 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 404 - -
Vvi11g601 413 SMART ELK_2 305 326 IPR005539 GO:0003677
Vvi11g601 413 SMART HOX_1 327 392 IPR001356 GO:0003677
Vvi11g601 413 SUPERFAMILY Homeodomain-like 327 390 IPR009057 -
Vvi11g601 413 MobiDBLite consensus disorder prediction 85 125 - -
Vvi11g601 413 SMART KNOX1_2 141 185 IPR005540 GO:0003677|GO:0005634
Vvi11g601 413 Pfam Homeobox KN domain 345 384 IPR008422 GO:0003677|GO:0006355
Vvi11g601 413 CDD homeodomain 328 389 IPR001356 GO:0003677
Vvi11g601 413 Gene3D - 324 397 - -
Vvi11g601 413 ProSiteProfiles ELK domain profile. 305 325 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g540 Vvi11g601 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13746 PF03791 KNOX2 3.30E-20 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g601 - - vri:117924649 787.719