Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g627 ATGGCTGTTCATTATGTGCCAACTCTCTACTCAGTGAGCTACCACATTGAGGCAATACAGAGGAACTTGGATTGGGCACATATTCCAGCATATGACTATTATTTGCCTTCAAGGGTGAACTTTACACACGCCCATGCTGCTTTGTATGATCCATTGAGCAATGTTAGCACTGATTTTGGTATTAGGGAATGGATCAGTAAAGGGTTCCCTGCTAGTAAGCTGGTTTTGGGGTTGCCTTACCATGGATATGCATGGACACTTGTGAACCCTAACCACAATGGCATTGGCGCACCCACTTCAGGTATAGCCATGACAGCAGATGGATCCATGAGCTATAAATACATCAAGTGGTTCCTTCGAAGTTATGGGGCTACTTCAATGTACAATGCTACTTATGTAGTGAATTACGTCACTATTGGAACAACTTGGATTGGTTTTGATGATGTGCAGGCTATCAGAGCTAAAATTTCTTATGCCAAGGAGAAGAAGCTACTTGGTTACAATGTGTTCCAGGTTAGCAACGACGACAATTGGGCGCTTTCTCAGGCAGCTCAAGATGATGACAAAGTTCATCACAAGAAGCAGGAATTATTGATAAAAATTCTGGTTCCAATTGCTGTACTTATTCTTGTAGCAGGCTCCATAATGTGTTGTTACTCACGAAGCAGAGTACTCAAAGCAATAGGTAACTTTAGTGTTGAAAATTTTAACAGTAATGCTCCTAATCTGCGAGTGTTCAGTTTTGCTGAGATCAAAGAGGCTACAAATAACTTTTCCTTTGAAAATAAGCTTGGAGAGGGTGGATTTGGGCCTGTTTACAAGGGTAAATCACAGAAGGGAGAGGAAATGGCAGTGAAGAGGCTTTCGAAAACTTCTAATCAGGGAGCAGAGGAGTTCAAAAATGAGGTTACACTTACAGCCAAACTGCAACATGTAAATCTAGTTAGGCTTCAGGGATTTTGCACGGAAGGAGAAGAAAAGATGTTGATCTATGAGTACATGCCCAACAAAAGCCTGGATTTCTATCTGTTTGATCCTACTAGGCGCTATTTTTTAGATTGGACAAAGCGCATCGCCATCATTGAAGGGATTACTCAAGGACTTCTCTACCTCCAAGAATACTCCAACTTCACTATAATTCACCGGGATTTGAAAGCTAGCAACATTTTACTGGACAGCGAGATGAAGCCCAAGATTTCAGATTTTGGCATAGCTAGAGCTTTCCAAAAGGATGAACATGAGGCAAGTACAGGCCGGATTGTAGGAACGTATGGCTACGTTCCTCCTGAATACGTTCGAAGAGGGATATACTCCATGAAATATGATGTTTATAGCTTCGGAGTTCTACTTCTGCAGATAATTAGTAGCAGGAGGAATTCATGCACATATGGCTTGAGCCAAAACCTAAACCTTCTAGAATATGCATACGAGTTGTGGAAAGAGGGAGAAGGCATGAGGTTTATGGACCCATCACTAGATGACTCATCTTCGTCTTGTAAACTCATGGCATGCATGCAAGTAGCCCTGTTATGCATCCAAGAAAATCCGGACCATAGACCAACAATGTTGGAAGTGTCTTCAATGCTCAAAAGCGAAACTGCAGCCATGCCTGCCCCTTTAAGGCCTGCTTTTTCAATCAAAAGTAATGAAGATAAATTATCAGTCAATGATGCCACCACTTCTTCGCAGCAAAATATATTATCAGTCAATGATGCCACCATTTCTGATTTGGTACCACGGTGA 1743 41.82 MAVHYVPTLYSVSYHIEAIQRNLDWAHIPAYDYYLPSRVNFTHAHAALYDPLSNVSTDFGIREWISKGFPASKLVLGLPYHGYAWTLVNPNHNGIGAPTSGIAMTADGSMSYKYIKWFLRSYGATSMYNATYVVNYVTIGTTWIGFDDVQAIRAKISYAKEKKLLGYNVFQVSNDDNWALSQAAQDDDKVHHKKQELLIKILVPIAVLILVAGSIMCCYSRSRVLKAIGNFSVENFNSNAPNLRVFSFAEIKEATNNFSFENKLGEGGFGPVYKGKSQKGEEMAVKRLSKTSNQGAEEFKNEVTLTAKLQHVNLVRLQGFCTEGEEKMLIYEYMPNKSLDFYLFDPTRRYFLDWTKRIAIIEGITQGLLYLQEYSNFTIIHRDLKASNILLDSEMKPKISDFGIARAFQKDEHEASTGRIVGTYGYVPPEYVRRGIYSMKYDVYSFGVLLLQIISSRRNSCTYGLSQNLNLLEYAYELWKEGEGMRFMDPSLDDSSSSCKLMACMQVALLCIQENPDHRPTMLEVSSMLKSETAAMPAPLRPAFSIKSNEDKLSVNDATTSSQQNILSVNDATISDLVPR* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7197252 7200946 - Vvi11g627 Vvi11g627 772068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g627 580 Pfam Glycosyl hydrolases family 18 1 175 IPR001223 GO:0005975
Vvi11g627 580 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 191 IPR001223 GO:0005975
Vvi11g627 580 Gene3D Glycosidases 1 189 - -
Vvi11g627 580 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 576 - -
Vvi11g627 580 Gene3D Phosphorylase Kinase; domain 1 226 333 - -
Vvi11g627 580 SUPERFAMILY (Trans)glycosidases 1 186 IPR017853 -
Vvi11g627 580 SUPERFAMILY Protein kinase-like (PK-like) 241 558 IPR011009 -
Vvi11g627 580 Gene3D Transferase(Phosphotransferase) domain 1 334 538 - -
Vvi11g627 580 ProSiteProfiles Protein kinase domain profile. 258 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g627 580 SMART 2g34 1 175 IPR011583 GO:0008061
Vvi11g627 580 Pfam Protein tyrosine and serine/threonine kinase 259 528 IPR001245 GO:0004672|GO:0006468
Vvi11g627 580 SMART serkin_6 258 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g627 580 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 576 - -
Vvi11g627 580 Gene3D - 84 146 IPR029070 -
Vvi11g627 580 SUPERFAMILY Chitinase insertion domain 82 146 IPR029070 -
Vvi11g627 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76060 PF07714 PK_Tyr_Ser-Thr 3.60E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g627 - - vvi:100265878 1154.04