Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g640 ATGACGGTGGAGGAAAGAAAAGGTGGTCTGGCTGGCGAAGATGGAGTTAAGGACCCGTTTCCGGTGGGTATGCGCGTGCTTGCCGTCGACGACGATCCGACTTGTCTTATGCTCTTGGATGGCCTGCTTCGTCGATGCCAGTATCAGGTTACAACAACCAACCAGGCGATCACAGCATTGAAGATGCTGAGGGAAAACAAGAACAACTTTGACCTGGTTATCAGTGATGTTAGTATGCCAGACATGGATGGTTTTAAACTCCTCGAGCTTGTGGGGCTTGAAATGGACCTACCTGTCATCATGTTGTCCTCGCATAGTGACCCCAAACTAGTAATGAGGGGGATTACTCATGGTGCTTGTGACTATTTGTTGAAACCGGTTCGAATTGAGGAGCTCAAGAACATATGGCAACATGTAATCAGGAGAAAGAAGATCGACTCCAAGGACCAAAACAAGTCTGCAGATCAGGACAACGCCCTACATGCAGATGGAGAAGAGAATGAGGATCCATCATCCCAAAAGAAACCTAGGGTTGTTTGGTCCGTGGAACTGCACAGGAAGTTTGTTGCAGCTGTTAATCAATTGGGCATTGAAAAGGCTGTTCCTAAGAGAATTCTTGACCTGATGAATGTTGAAGGACTTACAAGGGAAAATGTGGCTAGCCATTTGCAGAAATATAGGCTTTATCTGAAAAGGATCAGTTGTGTGGCAACCCAGCAAGCTAACATGGTTGCTGCATTTGGAGCTAAAGATTCCTCTTATATGCGCATGGGTTCGCTGGATGGATTTGGCCATGCCCAAAACTCAAGCAACTCTGTTAATACTCATGGGAAGCTTCAACCGGTTGTTTTACCAACAAACCAAAGTGCAAGTTTGTTTCAAGGGATTCCAACGTCATTGGAGCTAGACCAGTTGCAACAGAGAAAATGCATTAGTACCCAGAGAGGAGAGTTCAGTTCTGTTGATAACACAACAGTTTTCACAACTGCCAATGGCTTCCCTGATAGCAGAATGACTGTTCATAGCTCAAGCAACTCTTTATCCAATGCCCCAAGCAACCCTTTGATGTTACAATCTAATCCACAACAAACACTATGTAGGGGAGGGTTAGCAAATCAATCTTCCCTGAAAGCGGTTACTTTGAATCCAGAACCTTATACAATGGGCGTCAGTGGTTCATCTAATTTTCTGGATCATGGTAGATGTAATGAAAACTGGCAGAGTGCACTTCAATTGTCGAAGTTTCCATCAAATTCTTTGCCATTGAGTGAACCACTCAATTGCGATCCGTTGACTACTAATAACCTTAGAGAGCATATTTCTTCAACTGGCTCTCATATTCGACGTAGCCCAATTGATTTTTCTGCCACTAGTGTACTTGCAGGACCTCTTGAGGACTCAAGAGGAGAAATGCCATGCCAATCAGGGTTGATTGGTAATGTGGTTCAGAATATTAACTATGCACCAAAGCAAAGGTGGGAAGAACAGAAACAAGATTACACCCAGAGCTCAAATCATGTTTTTGGCACATTAAACTCTATCATTCCTGCCAACAATGTTATGGGTCCCTTAAACCACAGTTTGGACCAAAATAACGCAGCATGCAATAGAAAGATGGATATGCCTTTGATCAGTCAATCAAATGCTAGCTCTTCATCTCTTGTGCAGCACAGCGAGGTTGAGAAATCAGCTATGGACACAAAGATGGTGTCAAATGAAGACTACCTCTTGGAACAAACAAAGTCACAGGATGGCTTGATTCATAATAGTTACGAGTCCTTGGATGATCTAATGAGTGCAATGATAAAACGGGAACATGATGAGACTATGTTAATGAATGGAGAGTTCGGATTTGATGCATACTCCCTTGGACCATTGACTAAGTTAGACTTATCGATATATAGCACAAACATGAAGAAAAACAGAAAACAGAGTATTCTCAGAAGAAAAGATATTCAAGAAAATTGA 1968 42.84 MTVEERKGGLAGEDGVKDPFPVGMRVLAVDDDPTCLMLLDGLLRRCQYQVTTTNQAITALKMLRENKNNFDLVISDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDPKLVMRGITHGACDYLLKPVRIEELKNIWQHVIRRKKIDSKDQNKSADQDNALHADGEENEDPSSQKKPRVVWSVELHRKFVAAVNQLGIEKAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISCVATQQANMVAAFGAKDSSYMRMGSLDGFGHAQNSSNSVNTHGKLQPVVLPTNQSASLFQGIPTSLELDQLQQRKCISTQRGEFSSVDNTTVFTTANGFPDSRMTVHSSSNSLSNAPSNPLMLQSNPQQTLCRGGLANQSSLKAVTLNPEPYTMGVSGSSNFLDHGRCNENWQSALQLSKFPSNSLPLSEPLNCDPLTTNNLREHISSTGSHIRRSPIDFSATSVLAGPLEDSRGEMPCQSGLIGNVVQNINYAPKQRWEEQKQDYTQSSNHVFGTLNSIIPANNVMGPLNHSLDQNNAACNRKMDMPLISQSNASSSSLVQHSEVEKSAMDTKMVSNEDYLLEQTKSQDGLIHNSYESLDDLMSAMIKREHDETMLMNGEFGFDAYSLGPLTKLDLSIYSTNMKKNRKQSILRRKDIQEN* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7391537 7401203 + Vvi11g640 Vvi11g640 772081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g640 655 Pfam Myb-like DNA-binding domain 177 227 IPR001005 -
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 152 246 - -
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 156 - -
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 264 607 - -
Vvi11g640 655 SUPERFAMILY CheY-like 23 148 IPR011006 -
Vvi11g640 655 PIRSF RR_ARR_type-B 147 624 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi11g640 655 PIRSF RR_ARR_type-B 1 163 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi11g640 655 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 228 IPR006447 GO:0003677
Vvi11g640 655 MobiDBLite consensus disorder prediction 147 175 - -
Vvi11g640 655 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vvi11g640 655 Gene3D - 23 162 - -
Vvi11g640 655 MobiDBLite consensus disorder prediction 147 173 - -
Vvi11g640 655 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Vvi11g640 655 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Vvi11g640 655 CDD REC_typeB_ARR-like 26 140 - -
Vvi11g640 655 SMART REC_2 24 136 IPR001789 GO:0000160
Vvi11g640 655 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vvi11g640 655 Gene3D - 171 234 - -
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 156 IPR045279 GO:0009736
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 264 607 IPR045279 GO:0009736
Vvi11g640 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 152 246 IPR045279 GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g523 Vvi11g640 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13747 PF00072 Response_reg 1.00E-23 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g640 K14491 - vvi:100259369 1177.16