Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g647 ATGATCAGGTGTTTAGTTCTTTTCTCCTTGTTGATCCTCTCAACTTCAGCCCAGAAAACTTCCTCACAAACATGGCAGACTTTAAATGGTGATGAGCCTGTTGTTATAGCCCGTGGCGGATTCTCGGGACTTTTCCCTGAATCTAGCCAATTTGCACATCAAATTGCGCTTTCCACCAGCCTGTCCAATGTAATTTTGTACTGCAACCTGCAACTGACAAAGGATAGCGTTGGCATATGCCAGACAGATATAAGACTTGATAATTCAACAAATATAGCAGCTGTCTTTCCAAAATCCCAAAAAACCTACACAATTAATGGAGAAAATGTTCAGGGTTGGTTCGCTTTGGATTATACATCTGATCAGCTCTTTAACAATGTAACATTGACTCAAAGCATATACTCCCGGCCAAGTTTGTTTGATGGCACGCTGCCATTATCTACTGTTGATGATGCAATTGGGATCAAACCCCCTGGCTTTTGGTTGAATGTTCAGTATGATGCATTCTATGCTGCAAACAAACTCAGTGTATCATCATACATTCAAAAGACTACAAGATTTATGGGCATAAGTTACATTTCATCTCCTGAGATAGGTTTCTTGAAGAACATGAATAAAATCATAAACAAGGCCAAGACCAAACTCATCTTCCGGTTCCTAGATGCAGACGCAGTCGAACCCACAACCAAACAACCATATAGTTCAATATTAAAGGATCTTTCCTCAATCAAGTCAATTGCATCGGGAATTCTTGTCCCTAAAGAATATATATGGCCTCTTAGTAAGGACCAGTATCTGCTAACTCCCTCTAGTGTTGTAGCCGATGCTCATAAACAAGGCCTAGAAGTATATGCTTCTGGATTCGCAAATGATATGCCTGGAAGTTACAACTATAGTTATGACCCAACAGCTGAGTACCTGCAGTTTGTCGATAATTCAGATTTTTCTGTTGATGGAGTGCTCACAGATTTCCCTCCCACAGCATCAGAAGCCATTGCATGCTTAGCACACAACAAGAATGCTACCAGGCCTAGCAAAGGGAAAATTTTGGTCATATCTCACAATGGAGCAAGTGGGGTTTACCCTGGCAGTACTGATCTTGCATACCAGCAAGCAGTAGATGATGGGGCTGATATAATAGATTGCTCAGTCCAAATGTCAAAAGATGGAGTTGCCTTCTGCTTAAATTCAGCTGACCTCTTGGGGAGTTCTAATGCCATGACTTCTTTCATGTCTCGATCTACCATGGTCTCTGAAATTCAACCGAAGAGTGGAATTTTTTCGTTTGATCTCACATGGAGCGAGATTCAAACACTGACGCCTCAACTAACAAGTCCACTCCCAAATAGTGGCTTGGCAAGAAACCCAGCAAACAAGAACCAGGGGAAATTCATAACTCTCTCTGATTTCCTGGACTTTGCTAAGGCCAAGGCAGTTTCTGGAATTTTGATCGACATAGAGAATGCTGCCTACCTAGCATCGAAGAAGGGTCTTAGCATAATAGATGCTGTGACAGCTGCCTTGAGCAATGCCACCTTTGACAAACAAGCAACCCAACAAGTCATGATACAATCCGACGACACTTCAGTGCTGTCCAAGTTCAAGAATGTCCCAGGTTACAAGCGAGTTCTATCCATCAAGGAAATTATAGGTGATGTACCCAAGCAGACAGTGGAGGAGATAAAAAAATTTGCTGATGCAGTCAACCTCCCAAGATCGTCCATTGTCACAACTAATGGTGGCTTCACTACAACTTTTACCACTGTTGTTGATGAACTCCATGCTGCAAATATCTCAGCATATGTCTCAGTTCTCAGGAATGAATACGTCGCCATCGCATTCGATTTCTTCTCAGACCCGGTTGTGGAGCTTGCTACTTACGTTGGTCGCCTTGGAATTGATGGGGTTGTGACTGACTATCCAAAAACTGCAGACGCATATCTCAGAAGCCCCTGCTCGGATTTGAATGCGAAAGTGGCATATTCCATATTGCCAGCAGAGGCGGGTGCATTACTTGGGTTGGCAGAGCCGGAAGTGTTGCCGCCAGCAGAAGCCCCGGGGCCACCGCTCACAGTCGACGACGTTGTAGACCCACCACTGCCACAAGTATCATCATCAAATGGCTCAACAGCCGATCCGGCTGCTGGACCTGTTAAAGCCCCTCCACGTTCAAGTGGTCGGGCAAATGCTGCCAATATGGTGGAAAATGTAAATTTTATTTTAGAACTAATTGTCACATCCTTTACAAATTCATTTCATACTTGTACCTAA 2271 43.51 MIRCLVLFSLLILSTSAQKTSSQTWQTLNGDEPVVIARGGFSGLFPESSQFAHQIALSTSLSNVILYCNLQLTKDSVGICQTDIRLDNSTNIAAVFPKSQKTYTINGENVQGWFALDYTSDQLFNNVTLTQSIYSRPSLFDGTLPLSTVDDAIGIKPPGFWLNVQYDAFYAANKLSVSSYIQKTTRFMGISYISSPEIGFLKNMNKIINKAKTKLIFRFLDADAVEPTTKQPYSSILKDLSSIKSIASGILVPKEYIWPLSKDQYLLTPSSVVADAHKQGLEVYASGFANDMPGSYNYSYDPTAEYLQFVDNSDFSVDGVLTDFPPTASEAIACLAHNKNATRPSKGKILVISHNGASGVYPGSTDLAYQQAVDDGADIIDCSVQMSKDGVAFCLNSADLLGSSNAMTSFMSRSTMVSEIQPKSGIFSFDLTWSEIQTLTPQLTSPLPNSGLARNPANKNQGKFITLSDFLDFAKAKAVSGILIDIENAAYLASKKGLSIIDAVTAALSNATFDKQATQQVMIQSDDTSVLSKFKNVPGYKRVLSIKEIIGDVPKQTVEEIKKFADAVNLPRSSIVTTNGGFTTTFTTVVDELHAANISAYVSVLRNEYVAIAFDFFSDPVVELATYVGRLGIDGVVTDYPKTADAYLRSPCSDLNAKVAYSILPAEAGALLGLAEPEVLPPAEAPGPPLTVDDVVDPPLPQVSSSNGSTADPAAGPVKAPPRSSGRANAANMVENVNFILELIVTSFTNSFHTCT* 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7470446 7473633 + Vvi11g647 Vvi11g647 772088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g647 756 CDD GDPD_SHV3_repeat_1 33 331 - -
Vvi11g647 756 SUPERFAMILY PLC-like phosphodiesterases 32 331 IPR017946 GO:0006629|GO:0008081
Vvi11g647 756 Pfam Glycerophosphoryl diester phosphodiesterase family 354 643 IPR030395 GO:0006629|GO:0008081
Vvi11g647 756 MobiDBLite consensus disorder prediction 682 727 - -
Vvi11g647 756 ProSiteProfiles GP-PDE domain profile. 349 648 IPR030395 GO:0006629|GO:0008081
Vvi11g647 756 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 1 739 - -
Vvi11g647 756 ProSiteProfiles GP-PDE domain profile. 33 332 IPR030395 GO:0006629|GO:0008081
Vvi11g647 756 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 739 - -
Vvi11g647 756 CDD GDPD_SHV3_repeat_2 349 647 - -
Vvi11g647 756 Gene3D Phosphatidylinositol (PI) phosphodiesterase 348 648 IPR017946 GO:0006629|GO:0008081
Vvi11g647 756 Gene3D Phosphatidylinositol (PI) phosphodiesterase 31 332 IPR017946 GO:0006629|GO:0008081
Vvi11g647 756 SUPERFAMILY PLC-like phosphodiesterases 348 648 IPR017946 GO:0006629|GO:0008081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g647 - - vvi:100247394 1376.3