Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g655 ATGGAAGAGGAAATATTAAGTGTAATATCAAATGGAGGAACAAATGTGATTGTAGAAGCTTCAGATTCGAACAGCAGCAGTCTCCCATTTCATGGAAGCAAGCGCACAAAACAGGGTATTAGTGTCTCTTCTGGAAGGTTCAAAGGGGTTGTACCTCAGCAAAATGGGCACTGGGGTGCACAAATATATGCCAACCACCAGCGAATTTGGCTTGGTACATATAAATCAGAAACTGAAGCAGCAATGGCTTATGATAGTGCAGCCATCAAGCTCCGAAGTGGGGACAATCACAGGAATTTTCCATGGACTAACCTCACCATTCAAGAGCCCAACTTCCAAAGTTTTTTCAGTACTGAAACGGTAGTAAACATGATTAAGGATGGCTCCTACCCATCCAAGTTTGCTGAATTTCTGAAGACTGAATCACAGAGAGGAGAAACAGAAGTACTCAGTCTTGACCAAGTGGGTGTGCACCGGAATGGAAGGTTTATGTGTAGGCTTCTTTTCCAGAAGGAGCTTACCCCAAGTGATGTGGGTAAGCTCAACAGGCTTGTGATCCCAAAGAAATATGCTACTAAGCACTTTCCTCCTATTTCTGAAAGCGCGGAAGAAAATGAGGTTGGCATGAATTTACCTACTAAAATATTGCCCATCTCTACCCGAGATCCAGTAATGCAATTACATTTTTGTCTAAATTGTGGAGTAAATGTGCTTCCAAATGCGGTTTGA 729 42.52 MEEEILSVISNGGTNVIVEASDSNSSSLPFHGSKRTKQGISVSSGRFKGVVPQQNGHWGAQIYANHQRIWLGTYKSETEAAMAYDSAAIKLRSGDNHRNFPWTNLTIQEPNFQSFFSTETVVNMIKDGSYPSKFAEFLKTESQRGETEVLSLDQVGVHRNGRFMCRLLFQKELTPSDVGKLNRLVIPKKYATKHFPPISESAEENEVGMNLPTKILPISTRDPVMQLHFCLNCGVNVLPNAV* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7601962 7604681 - Vvi11g655 Vvi11g655 772096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g655 242 CDD B3_DNA 168 197 IPR003340 GO:0003677
Vvi11g655 242 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 Gene3D - 161 229 IPR015300 -
Vvi11g655 242 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Vvi11g655 242 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Vvi11g655 242 SUPERFAMILY DNA-binding pseudobarrel domain 167 202 IPR015300 -
Vvi11g655 242 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 Pfam AP2 domain 47 92 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 PANTHER DNA-BINDING PROTEIN RAV1 1 205 - -
Vvi11g655 242 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 205 IPR044800 GO:0003700
Vvi11g655 242 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g655 K09287 RAV; RAV-like factor - vvi:100250084 421.394
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g655 . . . . . . . Bma11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi8g941 . 1 104 RAV Transcription Factor Family AT2G36080 83.2 6.6e-47 184.1
Vvi2g277 ECH 152 286 RAV Transcription Factor Family AT2G36080 63.3 2.0e-43 172.6
Vvi15g596 ECH 87 229 RAV Transcription Factor Family AT2G36080 59.6 2.6e-43 172.2
Vvi15g596 ECH 65 304 RAV Transcription Factor Family AT2G46870 53.8 2.4e-63 239.6
Vvi2g277 ECH 126 359 RAV Transcription Factor Family AT2G46870 55.3 8.9e-63 237.7
Vvi8g941 . 1 104 RAV Transcription Factor Family AT2G46870 73.8 1.9e-41 166.8
Vvi8g941 . 1 146 RAV Transcription Factor Family AT3G11580 60.6 7.4e-46 181.0
Vvi2g277 ECH 145 271 RAV Transcription Factor Family AT3G11580 58.0 1.3e-39 160.2
Vvi15g596 ECH 90 209 RAV Transcription Factor Family AT3G11580 58.8 1.1e-38 157.1
Vvi15g596 ECH 89 304 RAV Transcription Factor Family AT3G61970 56.0 4.6e-56 215.3
Vvi2g277 ECH 148 359 RAV Transcription Factor Family AT3G61970 54.8 9.6e-54 207.6
Vvi8g941 . 1 191 RAV Transcription Factor Family AT5G06250 56.9 4.7e-52 201.8
Vvi11g655 . 33 208 RAV Transcription Factor Family AT1G50680 55.3 7.7e-52 201.4
Vvi11g655 . 46 206 RAV Transcription Factor Family AT1G51120 61.2 2.5e-53 206.5
Vvi14g918 ECH 35 249 RAV Transcription Factor Family AT1G13260 50.2 2.6e-63 239.6
Vvi1g266 ECH 96 227 RAV Transcription Factor Family AT1G13260 62.1 2.5e-37 153.3
Vvi8g941 . 1 110 RAV Transcription Factor Family AT1G13260 67.6 3.2e-37 152.9
Vvi8g941 . 1 106 RAV Transcription Factor Family AT3G25730 67.0 2.4e-37 153.3
Vvi1g266 ECH 95 229 RAV Transcription Factor Family AT1G68840 64.2 4.1e-40 162.5
Vvi8g941 . 1 112 RAV Transcription Factor Family AT1G68840 67.5 1.1e-37 154.5
Vvi8g941 . 1 106 RAV Transcription Factor Family AT3G25730 67.0 2.4e-37 153.3
Vvi11g655 . 46 206 RAV Transcription Factor Family AT1G51120 61.2 2.5e-53 206.5
Vvi8g941 . 1 146 RAV Transcription Factor Family AT3G11580 60.6 7.4e-46 181.0
Vvi2g277 ECH 145 271 RAV Transcription Factor Family AT3G11580 58.0 1.3e-39 160.2
Vvi15g596 ECH 90 209 RAV Transcription Factor Family AT3G11580 58.8 1.1e-38 157.1
Vvi8g941 . 1 104 RAV Transcription Factor Family AT2G36080 83.2 6.6e-47 184.1
Vvi2g277 ECH 152 286 RAV Transcription Factor Family AT2G36080 63.3 2.0e-43 172.6
Vvi15g596 ECH 87 229 RAV Transcription Factor Family AT2G36080 59.6 2.6e-43 172.2
Vvi8g941 . 1 191 RAV Transcription Factor Family AT5G06250 56.9 4.7e-52 201.8
Vvi15g596 ECH 65 304 RAV Transcription Factor Family AT2G46870 53.8 2.4e-63 239.6
Vvi2g277 ECH 126 359 RAV Transcription Factor Family AT2G46870 55.3 8.9e-63 237.7
Vvi8g941 . 1 104 RAV Transcription Factor Family AT2G46870 73.8 1.9e-41 166.8
Vvi11g655 . 33 208 RAV Transcription Factor Family AT1G50680 55.3 7.7e-52 201.4
Vvi15g596 ECH 89 304 RAV Transcription Factor Family AT3G61970 56.0 4.6e-56 215.3
Vvi2g277 ECH 148 359 RAV Transcription Factor Family AT3G61970 54.8 9.6e-54 207.6
Vvi14g918 ECH 35 249 RAV Transcription Factor Family AT1G13260 50.2 2.6e-63 239.6
Vvi1g266 ECH 96 227 RAV Transcription Factor Family AT1G13260 62.1 2.5e-37 153.3
Vvi8g941 . 1 110 RAV Transcription Factor Family AT1G13260 67.6 3.2e-37 152.9
Vvi1g266 ECH 95 229 RAV Transcription Factor Family AT1G68840 64.2 4.1e-40 162.5
Vvi8g941 . 1 112 RAV Transcription Factor Family AT1G68840 67.5 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13748 PF00847 AP2 5.10E-06 CL0081 Vvi TF