Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g655 ATGGAAGAGGAAATATTAAGTGTAATATCAAATGGAGGAACAAATGTGATTGTAGAAGCTTCAGATTCGAACAGCAGCAGTCTCCCATTTCATGGAAGCAAGCGCACAAAACAGGGTATTAGTGTCTCTTCTGGAAGGTTCAAAGGGGTTGTACCTCAGCAAAATGGGCACTGGGGTGCACAAATATATGCCAACCACCAGCGAATTTGGCTTGGTACATATAAATCAGAAACTGAAGCAGCAATGGCTTATGATAGTGCAGCCATCAAGCTCCGAAGTGGGGACAATCACAGGAATTTTCCATGGACTAACCTCACCATTCAAGAGCCCAACTTCCAAAGTTTTTTCAGTACTGAAACGGTAGTAAACATGATTAAGGATGGCTCCTACCCATCCAAGTTTGCTGAATTTCTGAAGACTGAATCACAGAGAGGAGAAACAGAAGTACTCAGTCTTGACCAAGTGGGTGTGCACCGGAATGGAAGGTTTATGTGTAGGCTTCTTTTCCAGAAGGAGCTTACCCCAAGTGATGTGGGTAAGCTCAACAGGCTTGTGATCCCAAAGAAATATGCTACTAAGCACTTTCCTCCTATTTCTGAAAGCGCGGAAGAAAATGAGGTTGGCATGAATTTACCTACTAAAATATTGCCCATCTCTACCCGAGATCCAGTAATGCAATTACATTTTTGTCTAAATTGTGGAGTAAATGTGCTTCCAAATGCGGTTTGA 729 42.52 MEEEILSVISNGGTNVIVEASDSNSSSLPFHGSKRTKQGISVSSGRFKGVVPQQNGHWGAQIYANHQRIWLGTYKSETEAAMAYDSAAIKLRSGDNHRNFPWTNLTIQEPNFQSFFSTETVVNMIKDGSYPSKFAEFLKTESQRGETEVLSLDQVGVHRNGRFMCRLLFQKELTPSDVGKLNRLVIPKKYATKHFPPISESAEENEVGMNLPTKILPISTRDPVMQLHFCLNCGVNVLPNAV* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7601962 7604681 - Vvi11g655 Vvi11g655 772096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g655 242 CDD B3_DNA 168 197 IPR003340 GO:0003677
Vvi11g655 242 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 Gene3D - 161 229 IPR015300 -
Vvi11g655 242 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Vvi11g655 242 SUPERFAMILY DNA-binding domain 46 102 IPR016177 GO:0003677
Vvi11g655 242 SUPERFAMILY DNA-binding pseudobarrel domain 167 202 IPR015300 -
Vvi11g655 242 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 Pfam AP2 domain 47 92 IPR001471 GO:0003700|GO:0006355
Vvi11g655 242 PANTHER DNA-BINDING PROTEIN RAV1 1 205 - -
Vvi11g655 242 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 205 IPR044800 GO:0003700
Vvi11g655 242 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13748 PF00847 AP2 5.10E-06 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g655 K09287 - vvi:100250084 421.394