Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g655 | ATGGAAGAGGAAATATTAAGTGTAATATCAAATGGAGGAACAAATGTGATTGTAGAAGCTTCAGATTCGAACAGCAGCAGTCTCCCATTTCATGGAAGCAAGCGCACAAAACAGGGTATTAGTGTCTCTTCTGGAAGGTTCAAAGGGGTTGTACCTCAGCAAAATGGGCACTGGGGTGCACAAATATATGCCAACCACCAGCGAATTTGGCTTGGTACATATAAATCAGAAACTGAAGCAGCAATGGCTTATGATAGTGCAGCCATCAAGCTCCGAAGTGGGGACAATCACAGGAATTTTCCATGGACTAACCTCACCATTCAAGAGCCCAACTTCCAAAGTTTTTTCAGTACTGAAACGGTAGTAAACATGATTAAGGATGGCTCCTACCCATCCAAGTTTGCTGAATTTCTGAAGACTGAATCACAGAGAGGAGAAACAGAAGTACTCAGTCTTGACCAAGTGGGTGTGCACCGGAATGGAAGGTTTATGTGTAGGCTTCTTTTCCAGAAGGAGCTTACCCCAAGTGATGTGGGTAAGCTCAACAGGCTTGTGATCCCAAAGAAATATGCTACTAAGCACTTTCCTCCTATTTCTGAAAGCGCGGAAGAAAATGAGGTTGGCATGAATTTACCTACTAAAATATTGCCCATCTCTACCCGAGATCCAGTAATGCAATTACATTTTTGTCTAAATTGTGGAGTAAATGTGCTTCCAAATGCGGTTTGA | 729 | 42.52 | MEEEILSVISNGGTNVIVEASDSNSSSLPFHGSKRTKQGISVSSGRFKGVVPQQNGHWGAQIYANHQRIWLGTYKSETEAAMAYDSAAIKLRSGDNHRNFPWTNLTIQEPNFQSFFSTETVVNMIKDGSYPSKFAEFLKTESQRGETEVLSLDQVGVHRNGRFMCRLLFQKELTPSDVGKLNRLVIPKKYATKHFPPISESAEENEVGMNLPTKILPISTRDPVMQLHFCLNCGVNVLPNAV* | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7601962 | 7604681 | - | Vvi11g655 | Vvi11g655 | 772096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g655 | 242 | CDD | B3_DNA | 168 | 197 | IPR003340 | GO:0003677 | |
Vvi11g655 | 242 | CDD | AP2 | 46 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g655 | 242 | Gene3D | - | 161 | 229 | IPR015300 | - | |
Vvi11g655 | 242 | Gene3D | AP2/ERF domain | 45 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi11g655 | 242 | SUPERFAMILY | DNA-binding domain | 46 | 102 | IPR016177 | GO:0003677 | |
Vvi11g655 | 242 | SUPERFAMILY | DNA-binding pseudobarrel domain | 167 | 202 | IPR015300 | - | |
Vvi11g655 | 242 | SMART | rav1_2 | 46 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g655 | 242 | Pfam | AP2 domain | 47 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi11g655 | 242 | PANTHER | DNA-BINDING PROTEIN RAV1 | 1 | 205 | - | - | |
Vvi11g655 | 242 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 205 | IPR044800 | GO:0003700 | |
Vvi11g655 | 242 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 101 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13748 | PF00847 | AP2 | 5.10E-06 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g655 | K09287 | - | vvi:100250084 | 421.394 |