Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g658 ATGCTTCAGCAGCAGTTGCTTTTCAACGGGGATTCTTGCCTCGTTGACCGATCACAAAACGACGTCGTTGATGGGTCCTCCTCCTTCAAATCCCCCAATCAGGGAGGAGACGGTTCAGTTCAAGCTCTCTACAATGGCTTCGCCGGAGCTCTTCACGGCTCCGGTCAAGCCTCCAACCAAGCTCAGAATTTCCACCATCCTCAGGGTGGATCAATGCAGGCACAGAACTACGGAGCTCCGGCGACTGTGATGAACCAGACACCGGCGACTGGCTCAGCGGGTGGTGCTCCAGCACAGCCCAGACAGAGGGTGAGGGCAAGAAGGGGTCAGGCAACTGACCCACACAGCATCGCTGAGAGATTACGTAGAGAGAGAATTGCAGAGAGAATGAAGGCACTGCAGGAACTGGTTCCCAATGCCAACAAGACGGACAAGGCTTCAATGCTGGATGAGATCATTGACTATGTCAAATTCCTGCAGCTCCAAGTGAAGGTACTCAGCATGAGCAGGTTGGGCGGTGCCGCAGCTGTTGCTCCCCTCGTTGCTGATATGTCCTCTGAGGGAGGTGGTGACTGTATACAGGCTAGTGGGACAAGCGGCCCTACAGGAGGAAGGGCAACGAACGGAACACAAACAACCACATCAAACGACAGCCTCACAGTGACGGAGCACCAGGTGGCCAAACTCATGGAGGAGGACATGGGTTCCGCCATGCAGTATCTTCAAGGCAAAGGCTTATGCCTTATGCCCATCTCCCTCGCCACTGCCATCTCCACCACTACCTCCACCATGGGGAACGGCCTGGCCGACGCGCCCGTAAAAGACGCTGCCTCCGTTTCCAAGCCCTGA 849 55.83 MLQQQLLFNGDSCLVDRSQNDVVDGSSSFKSPNQGGDGSVQALYNGFAGALHGSGQASNQAQNFHHPQGGSMQAQNYGAPATVMNQTPATGSAGGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQASGTSGPTGGRATNGTQTTTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTTTSTMGNGLADAPVKDAASVSKP* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7656324 7659760 - Vvi11g658 Vvi11g658 772099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g658 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 170 IPR036638 GO:0046983
Vvi11g658 282 SMART finulus 116 165 IPR011598 GO:0046983
Vvi11g658 282 Pfam Helix-loop-helix DNA-binding domain 115 160 IPR011598 GO:0046983
Vvi11g658 282 MobiDBLite consensus disorder prediction 195 217 - -
Vvi11g658 282 MobiDBLite consensus disorder prediction 54 114 - -
Vvi11g658 282 PANTHER TRANSCRIPTION FACTOR BHLH69 22 264 - -
Vvi11g658 282 MobiDBLite consensus disorder prediction 17 37 - -
Vvi11g658 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Vvi11g658 282 MobiDBLite consensus disorder prediction 54 93 - -
Vvi11g658 282 Gene3D - 105 167 IPR036638 GO:0046983
Vvi11g658 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 264 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13749 PF00010 HLH 8.90E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g658 - - vvi:100243222 459.529