Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g660 ATGGCTGGGACTGGGGTGTTTGCAGAGATCATTGATGGAGATGTGTACAAGTACTACTCGGAGGGGGAATGGAGGAAGGCTGTTTCTGGGAAGTCTGTGGCCATTATTAACCCCACCACCAGGAAGACTCAGTACAGGGTTCAAGCTTGTTCACAAGAAGAGGTCAACAAGGCAATGGAAATAGCAAAAAGTGCACAAAAGATATGGGCAAAGACACCACTTTGGAAGCGAGCTGAGCTGCTTCACAAGGCAGCTGCTATCCTCAAAGAACACAAAGCCCCAATAGCAGAGTGCCTGGTGAAAGAAATTGCAAAGCCAGCCAAGGATGCAGTTACTGAGGTTGTGAGGTCTGGGGATTTGGTCTCTTATACTGCTGAAGAAGGGGTTAGGATTCTGGGAGAGGGAAAGTTCCTGGTGTCTGATAGCTTTCCTGGGAATGAGAGGAGCAAGTACTGCCTCACCTCAAAGATTCCACTTGGGGTAATCTTGGCCATTCCACCATTTAACTATCCGGTCAACCTTGCTGTCTCAAAAATTGCTCCTGCACTGATCGCTGGAAACTCAATCGTGCTCAAGCCTCCGACTCAGGGCGCTGTATCTGCTCTTCATATGGTGCATTGCTTTCACCTGGCCGGTTTTCCAAAAGGCGTTATCAGCTGTGTTACTGGGAAAGGCTCTGAAATTGGTGACTTCCTTACAATGCATCCTGGGGTGAACTGTATAAGCTTCACTGGCGGAGATACTGGTGTTGCAATTTCAAAGAAGGCAGGCATGATTCCGCTTCAGATGGAGCTGGGAGGAAAAGATGCCTGCATCGTGCTTGAAGATGCTGACCTAGATTTGGTTGCAGCAAACATCGTTAAAGGAGGCTTTTCTTACAGTGGTCAAAGATGCACTGCTGTTAAGGTTGTCTTGGCGATGGAATCCATAGCCGACACTCTTGTTGAGAAAGTGAACGCTAAAGTAGCAAAACTGACAGTTGGGCCACCGGAGGATGACTGCGATATCACTCCAGTTGTTTCAGAGTCCTCTGCAAATTTCATTGAAGGTTTGGTTATGGATGCTAAACAGAAAGGAGCAACATTTTGCCAGGAGTACAGGAGGGAGGGCAACCTTATTTGGCCTTTGTTGTTAGATAATGTTCGGCCTGATATGAGGATTGCATGGGAGGAGCCCTTTGGTCCAGTTTTGCCTGTACTTAGGATCAACTCTGTTGAAGAAGGAATCCACCATTGCAATGCTAGCAACTTTGGCCTCCAGGGTTGCGTCTTCACAAGGGACATCAACAAAGCAATCTTGATCAGTGATGCCATGGAGACAGGAACAGTTCAAATCAACTCGGCACCAGCTCGTGGGCCAGATCATTTTCCATTCCAGGGTTTGAAGGACAGTGGAATCGGTTCACAAGGAATTACCAACAGCATTAACATGATGACCAAGATCAAGAGCACTGTCATCAATTTACCATCCCCCTCATACACCATGGGCTAA 1491 47.42 MAGTGVFAEIIDGDVYKYYSEGEWRKAVSGKSVAIINPTTRKTQYRVQACSQEEVNKAMEIAKSAQKIWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERSKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGVISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIVKGGFSYSGQRCTAVKVVLAMESIADTLVEKVNAKVAKLTVGPPEDDCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVLRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPSPSYTMG* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7715925 7721814 - Vvi11g660 Vvi11g660 772101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g660 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Vvi11g660 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Vvi11g660 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Vvi11g660 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Vvi11g660 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Vvi11g660 496 SUPERFAMILY ALDH-like 16 487 IPR016161 GO:0016491
Vvi11g660 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Vvi11g660 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vvi11g660 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g512 Vvi11g660 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g660 K00131 - vvi:100260378 991.875