Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g667 | ATGGCTGGGAACCAGAGCTTTGAAGCTCCCGAAGCAGAGAAGGCTGAGCCGAACCCCGAGTCTGATTCGGGGTCGGATTCCGACTCGGCCGAATCGGGCTCTGAGGACGGAGAGGGACTCAGTGACTCGGAGGGAGTTGGAGCTGCTGAGTTGGGAGAGCCTCGTGAATCGGAAACCCTAGCTGTGGCTTCGTCGATTACGGAGAGTGGTTCGCAGTTACTCTCAGGTTCGGCGCTCAATTCTACTTCGCAGTCGCTTGCCTCGGTTGAATTCAAGGAGCAAGCTGGGGTGTGTCATCAAGAAGTTCGGACTACTGTAACAGCCCAGACCACTCATGTCCAAACAAAGAAGCAACTTCAGTCATCTGGTTGTCCAACTTCGTCAGTGGAATTATCACCAACTTCTGTTACCCAGTCTATTCAATCGGCTCCAAGTCCAACAATACTAGAACAAAGGCCATCACCATTTCCAAAGGTTAACAGTGAATGTATGCCAGAAGGGAACCAGAAAAATTCTTCTGACCTGAAAACTATATCTACTGTTCCTTCTGTGAAGACACCTTCTGCAGATGGCTACAATTGGCGGAAATATGGTCAGAAGCAGGTAAAGAGTCCTAAAGGTTCTCGAAGCTATTACAAATGCACATATTCTGACTGTTATGCTAAAAAGATTGAATGTTGTGATGACTCGGGCCAAGTGATAGAAATTATTTATAAAAGTCGGCACAATCATGATCCGCCTCGGAAGATTAACTGCATGAAAGAAGGCAAGCTTTCACCAGTTGGGCCTGTTACAGGGAATAGTACTACAGCTGACCCAGTAAGAATGCTTAATGATTCAGATCCATCTACATCTTCAAAAGAACCTGTACAAGAAACACCACTGATACCTGAAAGAAAAAGGCCAAATTCAGATGCTTCTGATGAGAATCCTGAAATTAAGGTTAAGGAGGAGCATATTGATGAGCCGGAGCCTAAACGGAGATCGAAGAAAAGCAGCTTAGGGAATTCAGGTTCTCACTTTAAACCTGGAAAAAAACCTAAATTTGTTGTGCATGCGGCGGGTGATGTGGGGATCTCAGGTGATGGCTACAGATGGCGCAAATATGGACAAAAGATGGTGAAGGGAAACCCTCACCCCAGGAACTATTACAGATGCACTTCTGCTGGATGTCCTGTTCGTAAGCATATTGAGACAGCCATAGATAACACCAGTGCTGTCATAATAACATACAAGGGGATACACGACCATGACATGCCTGTACCAAAAAAGCGACATGGCCCACCAAGTGCTCCCCTTGTTGCGGCTGCTGCTCCTGCTTCCATGAACAGCTTGCAGTTTAAGAAAACTGAAGCTTTCCAAAATCAAATATCTTCAACTCAATGGTCAGTGGACATGGAAGGTGAATTGGCAGCTGAGGAATTGGATCCAGGAGGGGAGAAAGCCATGGAATCTGCTCGAACTCTCCTGAGCATTGGATTTGAAATCAAGCCGTGCTGA | 1500 | 46.4 | MAGNQSFEAPEAEKAEPNPESDSGSDSDSAESGSEDGEGLSDSEGVGAAELGEPRESETLAVASSITESGSQLLSGSALNSTSQSLASVEFKEQAGVCHQEVRTTVTAQTTHVQTKKQLQSSGCPTSSVELSPTSVTQSIQSAPSPTILEQRPSPFPKVNSECMPEGNQKNSSDLKTISTVPSVKTPSADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKKIECCDDSGQVIEIIYKSRHNHDPPRKINCMKEGKLSPVGPVTGNSTTADPVRMLNDSDPSTSSKEPVQETPLIPERKRPNSDASDENPEIKVKEEHIDEPEPKRRSKKSSLGNSGSHFKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQFKKTEAFQNQISSTQWSVDMEGELAAEELDPGGEKAMESARTLLSIGFEIKPC* | 500 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7835814 | 7846137 | + | Vvi11g667 | Vvi11g667 | 772108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 109 | 192 | - | - | |
Vvi11g667 | 499 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 21 | 497 | IPR044810 | GO:0003700 | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 262 | 291 | - | - | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 293 | 331 | - | - | |
Vvi11g667 | 499 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 21 | 497 | - | - | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 60 | 86 | - | - | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 243 | 349 | - | - | |
Vvi11g667 | 499 | SUPERFAMILY | WRKY DNA-binding domain | 356 | 420 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | SMART | WRKY_cls | 360 | 419 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | SMART | WRKY_cls | 188 | 246 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | SUPERFAMILY | WRKY DNA-binding domain | 186 | 247 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 109 | 149 | - | - | |
Vvi11g667 | 499 | Pfam | WRKY DNA -binding domain | 190 | 244 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | Pfam | WRKY DNA -binding domain | 362 | 417 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | ProSiteProfiles | WRKY domain profile. | 183 | 247 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | Gene3D | WRKY domain | 345 | 421 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | Gene3D | WRKY domain | 173 | 248 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Vvi11g667 | 499 | ProSiteProfiles | WRKY domain profile. | 355 | 420 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi11g667 | 499 | MobiDBLite | consensus disorder prediction | 164 | 187 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13750 | PF03106 | WRKY | 2.40E-23 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g667 | - | - | vvi:100262194 | 939.488 |