Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g667 ATGGCTGGGAACCAGAGCTTTGAAGCTCCCGAAGCAGAGAAGGCTGAGCCGAACCCCGAGTCTGATTCGGGGTCGGATTCCGACTCGGCCGAATCGGGCTCTGAGGACGGAGAGGGACTCAGTGACTCGGAGGGAGTTGGAGCTGCTGAGTTGGGAGAGCCTCGTGAATCGGAAACCCTAGCTGTGGCTTCGTCGATTACGGAGAGTGGTTCGCAGTTACTCTCAGGTTCGGCGCTCAATTCTACTTCGCAGTCGCTTGCCTCGGTTGAATTCAAGGAGCAAGCTGGGGTGTGTCATCAAGAAGTTCGGACTACTGTAACAGCCCAGACCACTCATGTCCAAACAAAGAAGCAACTTCAGTCATCTGGTTGTCCAACTTCGTCAGTGGAATTATCACCAACTTCTGTTACCCAGTCTATTCAATCGGCTCCAAGTCCAACAATACTAGAACAAAGGCCATCACCATTTCCAAAGGTTAACAGTGAATGTATGCCAGAAGGGAACCAGAAAAATTCTTCTGACCTGAAAACTATATCTACTGTTCCTTCTGTGAAGACACCTTCTGCAGATGGCTACAATTGGCGGAAATATGGTCAGAAGCAGGTAAAGAGTCCTAAAGGTTCTCGAAGCTATTACAAATGCACATATTCTGACTGTTATGCTAAAAAGATTGAATGTTGTGATGACTCGGGCCAAGTGATAGAAATTATTTATAAAAGTCGGCACAATCATGATCCGCCTCGGAAGATTAACTGCATGAAAGAAGGCAAGCTTTCACCAGTTGGGCCTGTTACAGGGAATAGTACTACAGCTGACCCAGTAAGAATGCTTAATGATTCAGATCCATCTACATCTTCAAAAGAACCTGTACAAGAAACACCACTGATACCTGAAAGAAAAAGGCCAAATTCAGATGCTTCTGATGAGAATCCTGAAATTAAGGTTAAGGAGGAGCATATTGATGAGCCGGAGCCTAAACGGAGATCGAAGAAAAGCAGCTTAGGGAATTCAGGTTCTCACTTTAAACCTGGAAAAAAACCTAAATTTGTTGTGCATGCGGCGGGTGATGTGGGGATCTCAGGTGATGGCTACAGATGGCGCAAATATGGACAAAAGATGGTGAAGGGAAACCCTCACCCCAGGAACTATTACAGATGCACTTCTGCTGGATGTCCTGTTCGTAAGCATATTGAGACAGCCATAGATAACACCAGTGCTGTCATAATAACATACAAGGGGATACACGACCATGACATGCCTGTACCAAAAAAGCGACATGGCCCACCAAGTGCTCCCCTTGTTGCGGCTGCTGCTCCTGCTTCCATGAACAGCTTGCAGTTTAAGAAAACTGAAGCTTTCCAAAATCAAATATCTTCAACTCAATGGTCAGTGGACATGGAAGGTGAATTGGCAGCTGAGGAATTGGATCCAGGAGGGGAGAAAGCCATGGAATCTGCTCGAACTCTCCTGAGCATTGGATTTGAAATCAAGCCGTGCTGA 1500 46.4 MAGNQSFEAPEAEKAEPNPESDSGSDSDSAESGSEDGEGLSDSEGVGAAELGEPRESETLAVASSITESGSQLLSGSALNSTSQSLASVEFKEQAGVCHQEVRTTVTAQTTHVQTKKQLQSSGCPTSSVELSPTSVTQSIQSAPSPTILEQRPSPFPKVNSECMPEGNQKNSSDLKTISTVPSVKTPSADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKKIECCDDSGQVIEIIYKSRHNHDPPRKINCMKEGKLSPVGPVTGNSTTADPVRMLNDSDPSTSSKEPVQETPLIPERKRPNSDASDENPEIKVKEEHIDEPEPKRRSKKSSLGNSGSHFKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQFKKTEAFQNQISSTQWSVDMEGELAAEELDPGGEKAMESARTLLSIGFEIKPC* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7835814 7846137 + Vvi11g667 Vvi11g667 772108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g667 499 MobiDBLite consensus disorder prediction 109 192 - -
Vvi11g667 499 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 497 IPR044810 GO:0003700
Vvi11g667 499 MobiDBLite consensus disorder prediction 262 291 - -
Vvi11g667 499 MobiDBLite consensus disorder prediction 293 331 - -
Vvi11g667 499 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 21 497 - -
Vvi11g667 499 MobiDBLite consensus disorder prediction 60 86 - -
Vvi11g667 499 MobiDBLite consensus disorder prediction 243 349 - -
Vvi11g667 499 SUPERFAMILY WRKY DNA-binding domain 356 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 SMART WRKY_cls 360 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 SMART WRKY_cls 188 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 SUPERFAMILY WRKY DNA-binding domain 186 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 MobiDBLite consensus disorder prediction 109 149 - -
Vvi11g667 499 Pfam WRKY DNA -binding domain 190 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 Pfam WRKY DNA -binding domain 362 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 ProSiteProfiles WRKY domain profile. 183 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 Gene3D WRKY domain 345 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 Gene3D WRKY domain 173 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 MobiDBLite consensus disorder prediction 1 86 - -
Vvi11g667 499 ProSiteProfiles WRKY domain profile. 355 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi11g667 499 MobiDBLite consensus disorder prediction 164 187 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13750 PF03106 WRKY 2.40E-23 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g667 - - vvi:100262194 939.488