Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g674 ATGTTTGATTGTGGTCATAAGTCACAGTACATGGGGGTCCAACGAGAGAAGTTTGTAAGGTTGGATGACTTGGACTCCAAACTATCGATTTCTTCTGATCCAGGAGTTAATAGATGCGGATTCAGTATTGACGGGTTAAGCCATGTTGGTCTTGCGAGAAGTACATCATCTAGATCTTTGAAGAAAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCAATTGGCCGATCACTTGGATTTGGGGTTTCTCGAGCAGTATTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGACCCTCAACACAAATTCCTTCAGTTGTGGAATAAACTTTTTGTCATATCATGTATTCTTGCAGTATCTGTGGACCCTCTGTTCTTTTATCTTCCAGTCATTGATAGTTCATCAAAATGCCTTGGTATAGATCGTAAGTTAGCAATCACAGCGACAACATTGCGGACAATTATTGATGCTTTCTATCTTATCCATATGGCTCTCCAATTCCGAACAGCTTATATTGCCCCATCATCTCGGGTTTTTGGGCGAGGTGAACTTGTGATAGATCCTGCAAGAATAGCTAAACGGTATTTGCGAACGTACTTCATCATTGATTTTCTTGCTGTGCTGCCACTACCACAGATTGTGGTCTGGAGATTTCTTCATAGTTCAGATGGTTCAGATGTATTGTCTACAAAACAAGCTCTGTTCTTCATAGTCTTACTTCAATACATCCCTAGGCTGTTTCGAATGCTACCCTTATCTTCAGAACTGAAAAGGACTTCTGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTTCTGTACATGCTTGCTAGTCATATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGTATTGCAGTAACAGGCACACGGAGGGTTATGATGCCTGGCTCATAGACAGTGACAATGTTCTTAATTCAAATTGCTCTGTAGAAGGTGACAATCCACCATTTAATTATGGAATCTATACCAACGCTCTGTCATCTGGCATTGTTTCATCCAAGAAGTTCTTATCTAAATACTGTTACTGTTTGTGGTGGGGTCTACAGAATTTAAGCACACTCGGGCAGGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGGCGCGACTCAGAGCAGTGGATGCATCATCGCTTACTCCCACAAGAACTCAGGGAACGGGTTAGACGATATGATCAATACAAATGGTTGGAAACACGTGGAGTAGATGAAGAAAACTTGGTTCAAAGTCTACCAAAGGATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGGGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAGCGACTGAAACCAAGTTTATTCACAGAAAATACCTTCATTGTGCGAGAAGGAGATCCAGTTGATGAGATGCTGTTTATTATACGGGGTCGCCTTGAGAGCGTAACCACTGGTGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTGCTGAAAGAAGGGGATTTCTGTGGGGAGGAACTTCTAACTTGGGCGCTGGATCCAAAATCGGGTTCTAACCTTCCATCTTCTACACGGACAGTGAAGGCCCTTACAGAGGTGGAGGCTTTTGCTCTAATAGCTGAGGAATTGAAATTTGTGGCCAGCCAGTTCAGGCGCCTGCACAGTAGACAGGTTCAACACACCTTCCGTTTTTACTCACAGCAATGGAGAACTTGGGCTGCGTGCTTTATCCAAGCAGCATGGCGCCGGTACTCCAAGAGGAAGATTCTGGAGCTTCGGCGGAAGGAAGAAGAAGAGGAAGAAGCAGCAGCAGCTGCGGCAGCAGAAGGGCTGAGCGGGACCAACAATAATGTTCGAGGAGGCTCATATAGTCTGGGAGCCACTATCTTAGCTTCCAGGTTTGCAGCAAATGCTCTAAGGGGGGTTCATAGGAACCGTATCACTAAGAGTGCTAGGGAACTGGTGAAGCTACAGAAGCCTCCAGAGCCAGATTTCTCTGCTGATGATGCAGATTAA 2232 44.35 MFDCGHKSQYMGVQREKFVRLDDLDSKLSISSDPGVNRCGFSIDGLSHVGLARSTSSRSLKKGMRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQHKFLQLWNKLFVISCILAVSVDPLFFYLPVIDSSSKCLGIDRKLAITATTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPARIAKRYLRTYFIIDFLAVLPLPQIVVWRFLHSSDGSDVLSTKQALFFIVLLQYIPRLFRMLPLSSELKRTSGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQRACAHSGNCKTDFLYCSNRHTEGYDAWLIDSDNVLNSNCSVEGDNPPFNYGIYTNALSSGIVSSKKFLSKYCYCLWWGLQNLSTLGQGLQTSIYPGEVIFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPSLFTENTFIVREGDPVDEMLFIIRGRLESVTTGGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKILELRRKEEEEEEAAAAAAAEGLSGTNNNVRGGSYSLGATILASRFAANALRGVHRNRITKSARELVKLQKPPEPDFSADDAD* 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7931551 7957611 - Vvi11g674 Vvi11g674 772115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g674 743 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g674 743 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g674 743 PRINTS EAG/ELK/ERG potassium channel family signature 401 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g674 743 PRINTS EAG/ELK/ERG potassium channel family signature 419 428 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g674 743 PRINTS EAG/ELK/ERG potassium channel family signature 469 476 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi11g674 743 MobiDBLite consensus disorder prediction 724 743 - -
Vvi11g674 743 ProSiteProfiles IQ motif profile. 642 671 IPR000048 GO:0005515
Vvi11g674 743 Coils Coil 661 681 - -
Vvi11g674 743 SUPERFAMILY cAMP-binding domain-like 435 625 IPR018490 -
Vvi11g674 743 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Vvi11g674 743 Gene3D - 111 431 - -
Vvi11g674 743 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 740 - -
Vvi11g674 743 Pfam Ion transport protein 107 432 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi11g674 743 CDD CAP_ED 506 637 IPR000595 -
Vvi11g674 743 Gene3D Helix hairpin bin 434 497 - -
Vvi11g674 743 Gene3D Jelly Rolls 504 624 IPR014710 -
Vvi11g674 743 SUPERFAMILY Voltage-gated potassium channels 101 428 - -
Vvi11g674 743 SMART cnmp_10 506 637 IPR000595 -
Vvi11g674 743 ProSiteProfiles cAMP/cGMP binding motif profile. 506 590 IPR000595 -
Vvi11g674 743 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 740 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g674 K05391 - vvi:100246671 1405.96