Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g694 ATGGAAGCCAGTGCTGGCCTGGTCGCTGGATCCCATAACCGGAACGAGCTTGTTGTCATTCATGGCCATGAGGAGCCCAAGCCCTTGAGGTCTTTGAATGGTCAGGTGTGTGAGATATGCGGTGACGAAATCGGTCTGACGGTGGATGGAGAGGTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGAGAGAAGGGAGCCAGCTTTGCCCTCAGTGCAAGACCAGATTCAAGCGTCTCAAAGGGTGTGCAAGGGTGGAGGGGGATGACGATGAAGAAGACATTGATGATATTGAACATGAATTCAACATCGATGATGAACAAAACAAGAATAAGCTTATCGCAGAAGCTATGCTTCATGGGAAGATGAGCTATGGACGTGGCCCTGAAGATGACGATAACGCTCAATTCCCACCTGTTATAACTGGTGTTCGATCCAGACCTGTGAGTGGAGAGTTCCCAATTTCGTCTCATGCCCCTGGAGAGCAGGGGCTGTCATCTTCACTTCATAAACGTGTGCACCCTTATCCAGTGTCTGAACCAGGAAGCGCGAGATGGGATGAGAAGAAAGAGGGAGGGTGGAAAGAGCGAATGGATGACTGGAAAATGCAGCAAGGGAACCTCGGCCCTGACGCTGACGACTACAATGACCCTGACATGGCCATGATTGAGGAAGCGAGGCAGCCACTGTCAAGGAAAGTACCGATTGCTTCAAGCAAGGTCAACCCTTACAGAATGGTGATCGTGGCTCGGCTTCTTGTTTTGGCGTTCTTCCTTCGCTATAGAATTTTGAATCCTGTACATGATGCCCTTGGGCTTTGGCTAGTGTCTGTGATATGTGAGATCTGGTTTGCCTTCTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATTGATCGCGAGACATATCTTGATCGCCTTTCTTTCAGGTATGAGAGGGAAGGGGAGCCCAATATGCTCTCTCCGGTGGATATCTTTGTCAGTACTGTGGATCCCTTGAAGGAACCTCCACTTGTTACAGCTAACACAGTTCTTTCAATCCTCGCCATGGACTACCCTGTCGACAAAATCTCATGCTACATCTCAGATGATGGAGCTTCCATCCTGACCTTTGAAGCACTCTCTGAAACTGCAGAATTCGCTAGGAGATGGGTTCCCTTCTGCAAGAAATTCTCCATAGAGCCTCGAGCTCCTGAGATGTACTTCTCTCTCAAGATTGATTATCTCAAGGACAAAGTCCAGCCTACCTTTGTTAAGGAGCGCCGCGCTATGAAGAGGGAATATGAAGAATTCAAGGTCCGGATCAATGCAATTGTTGCAAAGGCCGTGAAAGTTCCTCCAGAAGGGTGGATCATGCAAGATGGAACTCCATGGCCGGGGAACAACACCAAGGATCACCCAGGTATGATTCAGGTTTTTCTTGGACACAGTGGAGGTCTCGATGCAGAAGGAAATGAGCTGCCTCGCCTTGTCTATGTCTCTCGTGAGAAGAGGCCTGGTTTCCATCATCACAAGAAAGCTGGGGCCATGAATGCCCTGATTCGTGTCTCCGCAGTCCTCACAAATGCTCCTTTCATGCTTAACTTGGATTGTGATCATTATCTAAACAATAGCAAGGCTGTTCGAGAGGCAATGTGCTTCTTGATGGATCCACAAACTGGAAGGAAGGTTTGTTATGTCCAATTCCCTCAAAGATTTGATGGCATAGATAGGAACGATCGATATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGAAGGGTCTAGATGGGATTCAGGGCCCGGTATATGTGGGTACTGGATGTGTTTTCAGAAGACAAGCCCTATATGGATATGATCCTCCAAAGGGTCCCAAGCGCCCGAAGATGGTAAGCTGTGATTGCTGCCCCTGTTTTGGACGCCGCAAAAAGCTTCAAAAGTATGCTAAACATGGTGAAAATGGAGAAGGATTGGAAGAAGACAAAGAAATGTTGATGTCTCAGATGAACTTTGAAAAGAAATTTGGACAGTCAGCTATTTTCGTAACCTCTACTTTAATGGAGCAAGGTGGTGTCCCTCCTTCCTCAAGTCCAGCAGCCCTGCTTAAGGAAGCCATTCATGTCATCAGCTGTGGCTATGAAGACAAAACTGACTGGGGATTGGAGTTGGGATGGATATATGGGTCCATTACAGAGGATATTCTAACAGGGTTCAAGATGCATTGCCGTGGTTGGAGGTCTATATACTGCATGCCAAAGAGACCAGCATTTAAGGGGTCAGCTCCCATTAACTTGTCTGATCGTCTCAACCAGGTGCTTCGGTGGGCTCTTGGCTCTGTTGAAATCTTCTTCAGTCGTCACAGCCCTGTCTGGTATGGCTACAAGGGAGGAAACCTCAAGTGGCTCGAGCGATTTGCATATGTCAACACAACAGTCTATCCCTTCACCTCCTTACCTCTCCTTGCCTATTGTACTCTTCCTGCCATCTGCTTGCTCACCGGAAAATTCATCATGCCGACGATAAGCACTTTCGCAAGTCTCTTCTTCATTGCTCTCTTTATCTCTATCTTCGCAACTGGCATTCTGGAACTGAGGTGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTGTGTCAGCTCATCTCTTTGCAGTGGTGCAGGGTCTTCTGAAGGTTTTGGCTGGAATAGATACCAACTTCACAGTCACATCAAAGGCAGTCGATGATGAGGAGTTCGGGGAGCTGTATACCTTCAAATGGACCACCCTCCTTATCCCTCCAACCACTCTCTTAATCATCAACCTTGTTGGAGTAGTGGCTGGGATCTCTGATGCCATAAACAATGGGTACCAATCATGGGGACCTCTATTCGGGAAGCTCTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTCAAAGGTCTCATGGGGCGGCAGAACCGGACACCTACCATTGTTGTCATATGGTCTGTGCTTCTGGCTTCTATCTTCTCCTTGCTTTGGGTCCGAATTGACCCATTCATATTAAAGACCAAGGGACCTGATGTTAAGCAATGTGGAATCAATTGCTGA 3114 47.78 MEASAGLVAGSHNRNELVVIHGHEEPKPLRSLNGQVCEICGDEIGLTVDGEVFVACNECGFPVCRPCYEYERREGSQLCPQCKTRFKRLKGCARVEGDDDEEDIDDIEHEFNIDDEQNKNKLIAEAMLHGKMSYGRGPEDDDNAQFPPVITGVRSRPVSGEFPISSHAPGEQGLSSSLHKRVHPYPVSEPGSARWDEKKEGGWKERMDDWKMQQGNLGPDADDYNDPDMAMIEEARQPLSRKVPIASSKVNPYRMVIVARLLVLAFFLRYRILNPVHDALGLWLVSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASILTFEALSETAEFARRWVPFCKKFSIEPRAPEMYFSLKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAVKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFHHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQTGRKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGRRKKLQKYAKHGENGEGLEEDKEMLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLKWLERFAYVNTTVYPFTSLPLLAYCTLPAICLLTGKFIMPTISTFASLFFIALFISIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKAVDDEEFGELYTFKWTTLLIPPTTLLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFILKTKGPDVKQCGINC* 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8370637 8375427 + Vvi11g694 Vvi11g694 772135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g694 1037 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Vvi11g694 1037 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1037 - -
Vvi11g694 1037 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1037 - -
Vvi11g694 1037 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Vvi11g694 1037 Pfam Cellulose synthase 333 1031 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi11g694 1037 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 858 IPR029044 -
Vvi11g694 1037 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 451 624 IPR029044 -
Vvi11g694 1037 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Vvi11g694 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vvi11g694 1037 SUPERFAMILY RING/U-box 21 107 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g694 K10999 - vvi:100248512 2111.26