Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g705 ATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCCTTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGACCAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCAGCTTTTCCGGATTAGTGTTGCACAACATGAGTACATGAACGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTACTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 546 42.67 MYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8705143 8706413 + Vvi11g705 Vvi11g705 772146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g705 181 Pfam Replication factor-A C terminal domain 24 170 IPR013955 -
Vvi11g705 181 Gene3D - 1 177 IPR012340 -
Vvi11g705 181 SUPERFAMILY Nucleic acid-binding proteins 2 177 IPR012340 -
Vvi11g705 181 CDD RPA1_DBD_C 12 176 IPR013955 -
Vvi11g705 181 PANTHER REPLICATION PROTEIN A SUBUNIT 1 174 - -
Vvi11g705 181 PANTHER REPLICATION FACTOR A 1, RFA1 1 174 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g705 K07466 - vvi:100255412 365.925