Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g707 ATGGCTTCCTTGTTCATCCTTGTTCTAGCTCTTCTCTATAATTCACATGTTTGGGGTTCCCCTTTGGTTGGAGGAGAGACACAAGAAAGAAACGAAGCAGTGGCTCTTCTAAGGTGGAAAGCCAACCTTGATAACGAAAGCCAAACCTTCCTGTCTTCTTGGTTTGGAAGCAGCCCTTGCAACAATTGGGTTGGGATTGCTTGTTGGAAGCCGAAGCCCGGAAGCGTCACGCACTTAAACCTTAGCGGTTTTGGTTTGAGAGATAATAATCTCAATGGTACAATCCCTCCTTCCATAGGAAACTTGATCAACTTGGCCACCCTATCCCTTTCTGGTAACAAACTTTTCGGGTCCGTCCCTTGGGAAATTGGACAGCTAAGATCTCTTACCAGTCTAAGTTTGTCGAATAATAGTTTCACGGGTCCAATCCCTTCTTCCCTGGGAAACTTGGTCAATTTAACCGTTTTGTGCTTCCTTAATAACAAATTTTCTGGCCCCATTCCTTCAAAAATGAATAATCTTATTCATTTGAAAGCTTTGCAATTGGGTGAGAATAAATTCAGTGGCCATTTGCCGCAACAAATATGCCTTGCTCGATTACATGTACTTGACCTATCTTCAAATGGTCTACACGGGGACATTCCAAAGAAATTGGGTAGCTTGACATTATTGTTTGATTTGGCTCTGAGTAACAACAAACTTTCAGGCAACCTTCCTTTGGAAATGGGAATGCTATCTGATTTTCAACATCTTAACTTGGCATCAAACAACTTAAGTGGCTCAATTCCTAAACAACTAGGAGAGTGTTGGAAATTACTGTCCTTGAATTTGAGCAAGAATAATTTTGAAGAAAGCATTCCATCTGAGATCGGCAATATGATCTCTCTTGGAAGTCTCGATCTTAGTGAAAATATGCTTACAGGAGAAATACCACAGCAGCTTGGCAAATTGCAGAACCTAGAAATATTGAATCTCTCTCATAATGGACTCTCTGGTTCTATACCATCCACTTTCAAGGATATGCTGGGCCTTAGTTCTGTTGATATATCGTACAACCAATTAGAGGGTCCTCTTCCCAACATCAAAGCCTTTCGAGAGGCTTCGTTTGAGGCACTTAGAAACAATAGTGGCTTGTTCAGAAAACACAAGTCAAGAGAGACTTGTGAAGATCTATTTGCATTATGGGGCCATGATGGAGAGATGTTGTATGAAGACATCATCAAGGTAACTAAGGAGTTCAATTCGAAATATTGCATTGGTGGGGGAGGATATGGAACGGTTTATAAGGCCGAGCTACCAACTGGTAGAGTTGTTGCTATTCGTGCTTTAACAGAAATGAGACATCGCAACATTGTGAAACTCTATGGGTTTTGTTCACATGCAGAACACACATTTTTAATTTATGAGTTTATGGAAAAGGGAAGCCTAAGACACATTCTAAGCAATGAGGAAGAAGCACTGGAATTGGACTGGAGCATGAGGCTGAATATTGTGAAAGGTGTCGCGGAGGCATTATCTTACATGCATCATGATTGCTCACCCCCTATAATTCATAGGGATATATCCAGTAGCAATGTTTTACTGGATTCTGAATACGAAGGTCACGTATCGGACTTTGGCACAGCAAGGCTCTTAAAGCCTGACTCCTCCAATTGGACCTCATTTGCAGGCACCTTTGGGTACACTGCTCCAGAGCTTGCTTACACATTGGAAGTGAATGATAAAACCGATGTTTTTAGTTTTGGAGTGGTAACATTGGAAGTGCTTATGGGAAGACATCCTGGTGATCTCATCTCATACCTATCATCCTCATCACCATCTTCTTCAACGTCTTATTTTTCACTGTTGAAAGATGTGTTAGACCCTCGCCTGTCACCTCCCACGGATCAAGTCGTTGAAGAAGTTGTCTTTGCTATGAAGCTAGCATTTACATGCTTGCATGCTAATCCCAAATCTCGGCCAACCATGCGACAAGTTTCTCAAGCACTATCCAGTAAGCAGAAGCCTCAGCAGCAGCAGCAGCAACAGGTTTCTAGCTCAGCATCTCAACCCAGCAGATCAATCTCAGCATCTCAACTTCCAGCTGAACTTCTCAACCTCCCAACCTCCTAA 2112 42.28 MASLFILVLALLYNSHVWGSPLVGGETQERNEAVALLRWKANLDNESQTFLSSWFGSSPCNNWVGIACWKPKPGSVTHLNLSGFGLRDNNLNGTIPPSIGNLINLATLSLSGNKLFGSVPWEIGQLRSLTSLSLSNNSFTGPIPSSLGNLVNLTVLCFLNNKFSGPIPSKMNNLIHLKALQLGENKFSGHLPQQICLARLHVLDLSSNGLHGDIPKKLGSLTLLFDLALSNNKLSGNLPLEMGMLSDFQHLNLASNNLSGSIPKQLGECWKLLSLNLSKNNFEESIPSEIGNMISLGSLDLSENMLTGEIPQQLGKLQNLEILNLSHNGLSGSIPSTFKDMLGLSSVDISYNQLEGPLPNIKAFREASFEALRNNSGLFRKHKSRETCEDLFALWGHDGEMLYEDIIKVTKEFNSKYCIGGGGYGTVYKAELPTGRVVAIRALTEMRHRNIVKLYGFCSHAEHTFLIYEFMEKGSLRHILSNEEEALELDWSMRLNIVKGVAEALSYMHHDCSPPIIHRDISSSNVLLDSEYEGHVSDFGTARLLKPDSSNWTSFAGTFGYTAPELAYTLEVNDKTDVFSFGVVTLEVLMGRHPGDLISYLSSSSPSSSTSYFSLLKDVLDPRLSPPTDQVVEEVVFAMKLAFTCLHANPKSRPTMRQVSQALSSKQKPQQQQQQQVSSSASQPSRSISASQLPAELLNLPTS* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8738807 8742130 + Vvi11g707 Vvi11g707 772148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g707 703 Gene3D Phosphorylase Kinase; domain 1 443 474 - -
Vvi11g707 703 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Vvi11g707 703 ProSiteProfiles Protein kinase domain profile. 413 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g707 703 Gene3D Ribonuclease Inhibitor 198 390 IPR032675 -
Vvi11g707 703 Gene3D Ribonuclease Inhibitor 85 197 IPR032675 -
Vvi11g707 703 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 198 388 - -
Vvi11g707 703 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 385 679 - -
Vvi11g707 703 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 85 197 - -
Vvi11g707 703 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 26 87 - -
Vvi11g707 703 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Vvi11g707 703 Gene3D Ribonuclease Inhibitor 25 84 IPR032675 -
Vvi11g707 703 Gene3D Phosphorylase Kinase; domain 1 398 442 - -
Vvi11g707 703 SUPERFAMILY L domain-like 54 375 - -
Vvi11g707 703 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Vvi11g707 703 Pfam Leucine Rich Repeat 319 339 IPR001611 GO:0005515
Vvi11g707 703 Gene3D Transferase(Phosphotransferase) domain 1 475 689 - -
Vvi11g707 703 SMART LRR_typ_2 245 269 IPR003591 -
Vvi11g707 703 SMART LRR_typ_2 317 340 IPR003591 -
Vvi11g707 703 SMART LRR_typ_2 126 150 IPR003591 -
Vvi11g707 703 SMART LRR_typ_2 197 221 IPR003591 -
Vvi11g707 703 MobiDBLite consensus disorder prediction 652 703 - -
Vvi11g707 703 PRINTS Leucine-rich repeat signature 296 309 - -
Vvi11g707 703 PRINTS Leucine-rich repeat signature 317 330 - -
Vvi11g707 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 85 197 - -
Vvi11g707 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 198 388 - -
Vvi11g707 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 385 679 - -
Vvi11g707 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 26 87 - -
Vvi11g707 703 Pfam Protein kinase domain 440 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g707 703 SUPERFAMILY Protein kinase-like (PK-like) 399 663 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76063 PF00069 Pkinase 1.20E-36 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g707 - - vvi:100265667 710.294