Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g708 ATGCTGGGCCTTAGTTCTGTTGATATATCTTACAACCAATTAGAGGGTCCTCTTCCCAACATCAAAGCCTTTCGAGAGGCTTCGTTTGAGGCACTTAGAAACAATAGTGGTTTGTGTGGAACCGCTGCTGTTCTGATGGTCTGTATCTCCTCTATAGAGAACAAAGCTAGTGAGAAGGACCATAAAATTGTGATTTTGATCATAATCCTTATCTCGAGCATTCTATTTCTTCTCTTCGTTTTCGTGGGACTTTATTTTCTTCTTTGTCGAAGGGTGAGGTTCAGAAAACACAAGTCAAGAGAGACTTCTTGTGAAGATCTATTTGCAATATGGGGCCATGATGGAGAGATGTTGTATGAAGACATCATCAAGGTAACTGAGGAGTTCAATTCGAAATATTGCATTGGTGGGGGAGGATATGGAACAGTTTATAAGGCCGAGCTACCAACTGGTAGAGTTGTTGCTGTGAAAAAGCTTCATCCACAACAAGATGGGGGGATGGCTGATTTGAAAGCTTTTACTGCTGAGATTCGTGCTTTAACAGAAATGAGACATCGCAACATTGTGAAACTCTACGGGTTTTGTTCACATGCAGAACACACATTTTTAATTTATGAGTTCATGGAAAAGGGAAGCCTAAGACACGTTCTAAGCAATGAGGAAGAAGCACTGGAATTGGACTGGAGCATGAGGCTGAATATTGTGAAAGGTGTCGCGGAGGCATTATCTTACATGCATCATGATTGCTCACCCCCTATAATTCATAGGGATATATCCAGTAGCAATGTTTTACTGGATTCTGAATACGAAGGTCACGTATCGGACTTTGGCACAGCAAGGCTCTTAAAGCCTGACTCCTCCAATTGGACCTCATTTGCAGGCACCTTTGGGTACACTGCTCCAGAGCTTGCTTACACATTAGAAGTGAATGATAAAACCGATGTTTTTAGCTTTGGAGTGGTAACATTGGAAGTGCTTGTGGGAAGACATCCTGGTGATCTCATCTCATACCTATCATCCTTGTCGTTATCATCCTCATCACAATCTTCTTCAACGTCTTATTTTTCACTGTTGAAAGATGTGTTAGACCCTCGCCTGTCACCTCCCACAGATCAAGTCGTTGAAGATGTTGTCTTTGCTATGAAGCTAGCATTTGCATGCTTGCATGCTAATCCCAAATCTCGGCCAACCATGCGACAAGTTTCTCAAGCACTATCCATGTCAGCACACATGGTAGAAAAGATGTGCCCTTTTACTGTTTCTCCATTTAACTTAAAGATTACACTAAACAAAAACAATAAGTTTAGGATATCTTACACAAGCTACCGATCTAGAAAAAAAAAGGGGAGGGGGGGGGGGGGGGGAAATGGAAGTAGGAGAGTGCATGTGAGTGTCACATAG 1401 42.18 MLGLSSVDISYNQLEGPLPNIKAFREASFEALRNNSGLCGTAAVLMVCISSIENKASEKDHKIVILIIILISSILFLLFVFVGLYFLLCRRVRFRKHKSRETSCEDLFAIWGHDGEMLYEDIIKVTEEFNSKYCIGGGGYGTVYKAELPTGRVVAVKKLHPQQDGGMADLKAFTAEIRALTEMRHRNIVKLYGFCSHAEHTFLIYEFMEKGSLRHVLSNEEEALELDWSMRLNIVKGVAEALSYMHHDCSPPIIHRDISSSNVLLDSEYEGHVSDFGTARLLKPDSSNWTSFAGTFGYTAPELAYTLEVNDKTDVFSFGVVTLEVLVGRHPGDLISYLSSLSLSSSSQSSSTSYFSLLKDVLDPRLSPPTDQVVEDVVFAMKLAFACLHANPKSRPTMRQVSQALSMSAHMVEKMCPFTVSPFNLKITLNKNNKFRISYTSYRSRKKKGRGGGGGNGSRRVHVSVT* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8926352 8936907 + Vvi11g708 Vvi11g708 772149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g708 466 Gene3D Transferase(Phosphotransferase) domain 1 208 417 - -
Vvi11g708 466 MobiDBLite consensus disorder prediction 442 466 - -
Vvi11g708 466 SUPERFAMILY Protein kinase-like (PK-like) 114 405 IPR011009 -
Vvi11g708 466 Pfam Protein kinase domain 132 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g708 466 ProSitePatterns Tyrosine protein kinases specific active-site signature. 253 265 IPR008266 GO:0004672|GO:0006468
Vvi11g708 466 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vvi11g708 466 Gene3D Phosphorylase Kinase; domain 1 91 207 - -
Vvi11g708 466 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 1 408 - -
Vvi11g708 466 CDD STKc_IRAK 135 415 - -
Vvi11g708 466 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 408 - -
Vvi11g708 466 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76064 PF00069 Pkinase 2.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g708 - - vvi:100267270 748.043