Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g710 ATGGCCCTTCAATATCCTCCATCCTATTCCTCACTCCCCCGACTCATCATCATTCTTTGCTTCTTCATCATTCTGTATTTCCCTTTTTGTTCAACATCATCGTCATTTCATGTCTCTTCTACATCTGCTTTTGCTTCTACCACTTCTTTGATTATTGAGCAAGAAAAAGAAGCACTTGCTCTTCTAACATGGAAATCCAGCCTTCATATTCGATCACAATCTTTCCTCTCTTCTTGGTCTGGAGTTTCCCCATGCAATAATTGGTTTGGAGTTACTTGCCACAAGTCAAAAAGTGTCTCCAGTTTAAACCTTGAAAGTTGTGGTCTAAGAGGTACGCTCTACAATCTCAATTTCTTATCACTCCCCAATCTTGTCACTCTTGATCTTTATAACAACTCGTTCTATGGAATCATTCCCACCCACATTAGTAATCTTTCCAAATTTATCACCATCCTTGACTTGGCAACTAATAAACTCAGTGGCCCCATTCCTCAAGAAATTGATAATCTCATACATTTGAAATCCTTGCACTTAGAAGAGAACAATTTTACTGGCCATTTACCTCAACAAATGTGTCTAGGTGGAGCACTTGAAAATTTTACAGCCATGGGGAACCATTTTACCGGTCCTATTCCAATGAGCTTGAGAAATTGCACTAGCTTATTTAGAGTTCGGCTTGAAAGAAACCAACTCGAAGGAAACATAACTGAAGTTTTTGGCGTATACCCAAACTTGAATTTTATGGATTTGAGTTCCAACAATTTGTATGGTGAGCTTTCTCATAAATGGGGGCAATGTGGTAGCCTAACAAGCCTGAACATATCCCACAATAATTTGTCTGGTATCATACCACCTCAACTTGGGGAAGCAATTCAACTGCATCGACTTGATCTCTCTTCAAATCATCTGCTCGGGAAGATCCCTAGAGAATTGGGTAAGCTAACATCAATGTTCCATTTGGTGTTAAGCAACAACCAACTTTCAGGCAACATTCCTTTGGAGGTGGGAAATCTTTTTAATCTTGAACATCTTAGCTTGACATCAAACAACTTAAGTGGCTCAATCCCTAAACAACTAGGAATGCTTTCCAAACTATTCTTTCTCAACTTGAGCAAGAATAAATTTGGGGAAAGCATTCCTGATGAGATTGGGAACATGCATTCCCTTCAAAATCTCGATCTCAGTCAAAACATGCTGAATGGGAAGATACCACAGCAGCTTGGAGAACTACAACGCTTAGAAACATTGAATCTCTCCCACAATGAACTCTCTGGTTCCATCCCATCCACTTTCGAAGATATGTTGAGTTTGACATCTGTTGATATATCTTCTAATCAGTTGGAGGGACCTCTCCCTGACATCAAAGCCTTTCAGGAGGCTCCATTTGAGGCATTCATGAGCAATGGTGGTTTATGTGGCAATGCCACTGGCAAGTCCAGTGAAACACCATGTGAAGATCTATTTGCAATATGGGACCATGATGGAGGGATATTGTATCAAGATATCATTGAGGTGACTGAGGAATTCAACTCTAAATATTGTATTGGGAGTGGAGGACAGGGCACAGTTTATAAGGCTGAGCTGCCAACTGGTCGGGTTGTTGCTGTGAAAAAGCTTCACCCACCACAAGATGAAATTCGACATCGAAACATTGTGAAGTTTTATGGCTATTGCTCACATGCAAGGCACTCGTTTTTGGTCTATAAGCTGATGGAAAAGGGAAGCCTAAGAAACATTCTAAGCAACGAGGAAGAAGCAATTGGGTTGGATTGGATTAGGAGGCTAAATATTGTGAAAGGTGTGGCGGAGGCATTATCTTATATGCATCATGATTGTTCACCCCCTATAATTCACAGGGACATATCCAGTAACAATGTTTTATTGGACTCTGAATATGAGGCTCATGTATCGGACTTCGGCACAGCAAGGCTTTTAAAGCCAGACTCATCATCCAATTGGACCTCATTCGCAGGCACCTTTGGGTATAGTGCTCCAGAGCTTGCTTACACCACCCAGGTGAATAATAAAACTGATGTTTATAGCTATGGGGTGGTGACATTGGAAGTAATTATGGGTAAACATCCTGGTGATCTCATCTCATCCCTGTCATCAGCATCATCATCGTCATCAGTCACAGCAGTGGCTGATTCTTTGTTGTTGAAGGATGCGATAGACCAACGCCTCTCACCTCCCATACATCAAATCAGTGAGGAAGTTGCATTTGCTGTGAAGCTAGCATTTGCGTGCCAGCATGTTAACCCCCATTGTCGGCCAACCATGAGGCAAGTTTCTCAGGCACTATCAAGTCAGAAGCCACCTTTGCAAAAACCATTCCCCATTATTACATTGAGAGAGCTGTTTCAGGGGTGA 2370 41.6 MALQYPPSYSSLPRLIIILCFFIILYFPFCSTSSSFHVSSTSAFASTTSLIIEQEKEALALLTWKSSLHIRSQSFLSSWSGVSPCNNWFGVTCHKSKSVSSLNLESCGLRGTLYNLNFLSLPNLVTLDLYNNSFYGIIPTHISNLSKFITILDLATNKLSGPIPQEIDNLIHLKSLHLEENNFTGHLPQQMCLGGALENFTAMGNHFTGPIPMSLRNCTSLFRVRLERNQLEGNITEVFGVYPNLNFMDLSSNNLYGELSHKWGQCGSLTSLNISHNNLSGIIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVGNLFNLEHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPDEIGNMHSLQNLDLSQNMLNGKIPQQLGELQRLETLNLSHNELSGSIPSTFEDMLSLTSVDISSNQLEGPLPDIKAFQEAPFEAFMSNGGLCGNATGKSSETPCEDLFAIWDHDGGILYQDIIEVTEEFNSKYCIGSGGQGTVYKAELPTGRVVAVKKLHPPQDEIRHRNIVKFYGYCSHARHSFLVYKLMEKGSLRNILSNEEEAIGLDWIRRLNIVKGVAEALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKPDSSSNWTSFAGTFGYSAPELAYTTQVNNKTDVYSYGVVTLEVIMGKHPGDLISSLSSASSSSSVTAVADSLLLKDAIDQRLSPPIHQISEEVAFAVKLAFACQHVNPHCRPTMRQVSQALSSQKPPLQKPFPIITLRELFQG* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9016104 9019990 + Vvi11g710 Vvi11g710 772151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g710 789 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 484 776 - -
Vvi11g710 789 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 37 149 - -
Vvi11g710 789 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 150 477 - -
Vvi11g710 789 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Vvi11g710 789 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Vvi11g710 789 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Vvi11g710 789 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Vvi11g710 789 Gene3D Ribonuclease Inhibitor 45 116 IPR032675 -
Vvi11g710 789 Gene3D Ribonuclease Inhibitor 117 480 IPR032675 -
Vvi11g710 789 PRINTS Leucine-rich repeat signature 269 282 - -
Vvi11g710 789 PRINTS Leucine-rich repeat signature 410 423 - -
Vvi11g710 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 37 149 - -
Vvi11g710 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 150 477 - -
Vvi11g710 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 484 776 - -
Vvi11g710 789 SUPERFAMILY RNI-like 101 451 - -
Vvi11g710 789 Gene3D Phosphorylase Kinase; domain 1 481 569 - -
Vvi11g710 789 SMART LRR_typ_2 266 290 IPR003591 -
Vvi11g710 789 SMART LRR_typ_2 314 338 IPR003591 -
Vvi11g710 789 SMART LRR_typ_2 410 433 IPR003591 -
Vvi11g710 789 SMART LRR_typ_2 170 194 IPR003591 -
Vvi11g710 789 SMART LRR_typ_2 121 145 IPR003591 -
Vvi11g710 789 SMART LRR_typ_2 362 386 IPR003591 -
Vvi11g710 789 ProSitePatterns Tyrosine protein kinases specific active-site signature. 616 628 IPR008266 GO:0004672|GO:0006468
Vvi11g710 789 ProSiteProfiles Protein kinase domain profile. 509 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g710 789 Pfam Protein kinase domain 512 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g710 789 SUPERFAMILY Protein kinase-like (PK-like) 496 767 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76066 PF00069 Pkinase 2.10E-37 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g710 - - vvi:100265559 1248.03