Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g729 ATGGCGAAGCTATCACAGCAAAACCATAAGAATAGTGCAAACAGCAATGCTACTAATACTACTCTCTCTGTGACAAAGGTGAAGCGGACTCGCAAAACTGTCCCCAGAGACTCTCCTCCTCAGCGGAGCTCGATATATCGGGGCGTCACGAGGCATCGGTGGACTGGCCGATACGAGGCTCATTTGTGGGATAAGAACTGCTGGAATGAATCACAGAACAAGAAAGGAAGACAAGTTTATCTCGGTGCCTACCATGATGAAGAAGCCGCAGCACATGCTTATGACTTGGCAGCTCTCAAATACTGGGGTCCAGAAACCATTCTCAATTTTCCGCTATCAACATATGAAAAGGAGTTGAAGGAAATGGAGGGTCTGTCAAGAGAAGAATACATTGGATCCTTGAGAAGAAGAAGCAGCGGTTTTTCTCGAGGTGTTTCAAAATATAGAGGGGTTGCAAGACATCATCACAATGGCAGATGGGAAGCGCGGATTGGCAGAGTGTTCGGCAACAAATACCTCTATCTTGGCACATATGCTACTCAGGAGGAGGCAGCGACTGCATATGATATGGCTGCCATAGAGTATCGCGGTCTTAACGCGGTTACCAACTTTGATCTCAGTCGCTACATCAAATGGTTAAAGCCTAATCAAAATAACCCATGCGAACAGCCCAATAACCCTAACCTTGACTCTAATTTGACTCCAAACCCTAATCATGATTTTGGAATCAGCTTCCTGAATCACCCACAGACTTCTGGTACTGCTGCCTGCAAGATGATGGAGATGACAACTGCCGCCGACCACCTATCGACACCGCCTGAGTCTGAGCTGCCACGGTGCAGCTTCCCTGACGACATTCAGACGTACTTCGAGTGCCAGGATTCCGGCAGTTACGAGGAAGGAGACGATGTTATCTTCAGTGAGCTCAACTCGTTCATACCTCCCATGTTCCAATGTGATTTCAGTGCTTAA 972 47.43 MAKLSQQNHKNSANSNATNTTLSVTKVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYHDEEAAAHAYDLAALKYWGPETILNFPLSTYEKELKEMEGLSREEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNQNNPCEQPNNPNLDSNLTPNPNHDFGISFLNHPQTSGTAACKMMEMTTAADHLSTPPESELPRCSFPDDIQTYFECQDSGSYEEGDDVIFSELNSFIPPMFQCDFSA* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9496523 9499281 + Vvi11g729 Vvi11g729 772170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g729 323 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Vvi11g729 323 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Vvi11g729 323 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Vvi11g729 323 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Vvi11g729 323 MobiDBLite consensus disorder prediction 1 28 - -
Vvi11g729 323 MobiDBLite consensus disorder prediction 1 45 - -
Vvi11g729 323 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 243 - -
Vvi11g729 323 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 258 309 - -
Vvi11g729 323 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Vvi11g729 323 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 258 309 - -
Vvi11g729 323 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 243 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13751 PF00847 AP2 5.20E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g729 K09285 - vvi:100255268 619.387