Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g801 ATGGCGTATGTGCATGGCCTTGGGCTGATCCACAGGGATCTAAAATCTGACAACTTGCTAATTTTTGCAGACAAGTCCATCAAAATTGCAGACTTTGGGGTTGCTCGAATAGAGGTGCAAACAGAAGGAATGACACCAGAGACAGGGACATACCGCTGGATGGCCCCGGAGATGATCCAGCACAGGCCTTACACACAGAAAGTCGACGTGTATAGCTTTGGGATCGTTCTTTGGGAACTCATCACTGGGATGCTTCCATTCCAGAACATGACTGCAGTTCAGGCAGCTTTTGCGATCATGACCCGATGCTGGGATGCCAACCCTGATGTGAGGCCTCCCTTCGCTGAAGTTGTAAGGATGCTTGAGAATGCAGAGACTGAAATTATGACGACTGTCCGCAAGGCCCGCTTCAGATGCTGTATGGCCCAACCAATGACTGCAGAGTGA 447 50.11 MAYVHGLGLIHRDLKSDNLLIFADKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAIMTRCWDANPDVRPPFAEVVRMLENAETEIMTTVRKARFRCCMAQPMTAE* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13477773 13485357 + Vvi11g801 Vvi11g801 772242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g801 148 SMART serkin_6 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g801 148 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Vvi11g801 148 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g801 148 PANTHER SERINE-THREONINE PROTEIN KINASE 1 135 - -
Vvi11g801 148 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Vvi11g801 148 Pfam Protein kinase domain 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g801 148 SUPERFAMILY Protein kinase-like (PK-like) 1 133 IPR011009 -
Vvi11g801 148 PANTHER BNAA09G41440D PROTEIN 1 135 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76070 PF00069 Pkinase 1.60E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g801 - - vvi:100263908 293.123