Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g804 ATGATTGGTTTAAAACTGGGGAAGCGGACTTACTTTGAAGATGTTTGTGCTGCTAGCACCGCTAAAACTACAACTTCTTCTGTCAATCCTGCATCATCTGTTTCTGCAACAAAGCGATTTAGAACATCTTATCAGAGTTCGCAAACCCCTCGTTGCCAAGTTGAAGGATGCAACCTTGACCTCAAGTCAGCTAAGGATTACCATCGCAGGCATAGAATCTGTGAAAACCATTCCAAAAGCCCCAAGGTCATTGTAGCTGGTTTGGAGCGCCGGTTTTGTCAACAGTGCAGCAGGTTCCATGAGTTGACAGAGTTTGATGACAAGAAGCGAAGTTGTCGTAGGCGCCTCAATGACCACAATGCACGGCGCCGCAGGCCACATCCAGAGTCAATCCAATTTAGCTCTGGAAGGCTGCCTTCATCACTATATGATGGCAGACAGCAGATTAATCTTGCATGCAACAGGTTACCAATCCCTGTTGCAACTCCTATGTGGCAAAATCCATGCAGCTTTAAGGACACCCAGACTGGAGGTTCTTTGATTAGGCCTGTAAAAGCAGTAGGCATTGATAAGCAGCTGCATTTGCCCACTGATGAGATGCCGGATGCTATTTCTATGCTACATGGTAACTCAGAGAGGATGTTGTCTTTTGATGGCAGTACACCTCGGGTCCTTAACCAAGGTTTAGAGGCATCTGCAATTGCTTCTAATTCAAATGTAGCACCAGATTTCCGGCGTGCTCTCTCTCTTCTGTCAACTAATTCTTGGGGTTTGAATGATCCTGGACCTACTTCTTTGGACCAGCTCATGCATAGTTTCAATTATTTAAAGCACCTTATGAGTCTGGCTGTTTTTATCCCAATCAAATTAACTGAGAACCAAGTCTGCTTCCAGTGTCAAAAAGAACTGCAAATAAAGTGTAGTCCGTGTGATGCATTCGAGAAAGCAATAATGGGGATTAGGATGCCTTTTGTCCATTGA 981 44.65 MIGLKLGKRTYFEDVCAASTAKTTTSSVNPASSVSATKRFRTSYQSSQTPRCQVEGCNLDLKSAKDYHRRHRICENHSKSPKVIVAGLERRFCQQCSRFHELTEFDDKKRSCRRRLNDHNARRRRPHPESIQFSSGRLPSSLYDGRQQINLACNRLPIPVATPMWQNPCSFKDTQTGGSLIRPVKAVGIDKQLHLPTDEMPDAISMLHGNSERMLSFDGSTPRVLNQGLEASAIASNSNVAPDFRRALSLLSTNSWGLNDPGPTSLDQLMHSFNYLKHLMSLAVFIPIKLTENQVCFQCQKELQIKCSPCDAFEKAIMGIRMPFVH* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13588594 13606856 - Vvi11g804 Vvi11g804 772245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g804 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 272 IPR044817 GO:0003677
Vvi11g804 326 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
Vvi11g804 326 PANTHER - 1 272 - -
Vvi11g804 326 MobiDBLite consensus disorder prediction 117 139 - -
Vvi11g804 326 Pfam SBP domain 52 125 IPR004333 GO:0003677
Vvi11g804 326 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Vvi11g804 326 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13756 PF03110 SBP 3.40E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g804 - - vvi:100246757 618.616