Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi11g810 | ATGAAGGCGCCTACGAACGGTGCTGCGGCTGCGGCGACGGCAGCCCCGAATCCATGCGAAGGAGAGAAAAAGAGCATCAACCCAGAGCTATGGCAGGCGTGCGCCGGACCTCTAGTGAACTTGCCGCCGGCGGGGACGCTCGTCGTCTATTTTCCACAAGGCCACAGTGAACAGGTTGCAGCATCTATGAAGAAAGATGTGGACGCTCAAATCCCAAACTATCCGAATCTTCCCTCGAGGCTGCTATGCATCCTCCATAATGTCACTTTGCATGCGGATCCGGAAACCGATGAAGTATATGCTCAGATGACACTCCAACCAGTTCCTGCTTATGACAAGGAATCATTGTTGAGATCAGACCTTGCACTCAAGACAAATAAACCACAAACAGATTTTTTCTGTAAAACTTTGACAGCAAGTGACACAAGCACACATGGAGGTTTCTCGGTACCACGCCGTGCAGCAGAGAAGATTTTCCCTCCTCTTGATTTCTCTATGCAACCACCTGCGCAAGAACTTGTGGCAAAGGACTTGCATGATAATGTATGGACCTTTCGTCATATCTACCGTGGGCAACCAAAACGCCACTTGCTGACGACAGGGTGGAGCCTTTTTGTTAGTGGAAAGAGGCTTTTTGCAGGTGACGCAGTCTTGTTTATTAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGGCGGGCTAACAGGCAACCCACCAATTTATCATCATCAGTTTTGTCAAGTGATAGTATGCACATTGGGATCCTAGCGGCAGCAGCCCATGCAGCTGCAAACAATAGCCCTTTTACTGTGTTTTACAATCCAAGGGCTAGCCCATCTGAATTTGTTATCCCTTTAGCCAAGTACTACAAGGCAGCCTACAGCAACCAAATATCTCTTGGCATGCGCTTCCGGATGATGTTTGAAACCGAAGAGTCGGGAACAAGAAGGTACATGGGTACAATTACAGGTATCAGTGATCTAGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAACGGAGGAACCGTGTCTCAATCTGGGAGATTGAACCAGTGACAGCCCCATTTTTTATCTGTCCTCCTCCATTCTTCCGATCAAAACGTCCGAGGCAACCAGGAATGCCAGATGATGAATCTTCTGATCTAGAGAATCTTTTCAAAAGGACAATGCCTTGGCTTGGTGATGATATCTGCATGAAAGATCCCCAGGCTGTCCATGGCCTGAGCTTAGTTCAATGGATGAACATGCAGCAAAACCCTCCCTTGGGTAACTCTGCACAACCAAACTACATGCATTCCTTATCAGGGTCTCTTGATCAGCTCACAAAGCTGCCTGCAACATTGAATCCATTGGGCTCTGTTATACAGCCACAGCAACAGTTGAATGATATTGCTCAGCAACCGAGGCAAAATTTGATGAATCAAACTCTACCCTCAAGCCAGGTTCAGGCTCAACTTCTGCAGCAGCCTCAAGCTCTGGTCCAAAACCACAATATTCTTCAGCAGCAACCATCTCCACCTGATCAAGCAAACCAACAATTGCAAATGTCTGACAATCAAATTCAGCTTCAACTGTTACAGAAGCTTCAGCAGCAACAGCAGTCCCTTCTAGCACAGCAGTCAACAATGCAACAAACTGCTCAACTTACTCAACTCCAAGATCCACAGAGGCAGCTCTTAGATGTGTCTCAGAACTTCTCCAGGTCTGTTGCATCTGGCCAAATACTGGAAATGCCTCAAGCAACATCCACCTCGCTCCCGCAATCGCTTGTTATTCCGCAGCAGATAACAAAGAGTAACAGCCAGACAAATGTTCGATTTTCTCATCCACCTCAGCAGCCAAAGCTTCAACAGCAGCAGCCTGGCATGCTGCCTGAATTGCCTGGGCATGTGGTACTTCCCCCAATGACAGCAACTAATCAGCTTTCCACTGCTGGAAGCAGTTTGCTGACTGGTGCTGCAGGAGCAGGGCAATCTGGGATTACCGATGATGTTCCATCTTGCTCCACCTCACCATCCACTAACAACTGCCCAAATGTAATTCAACCAATCTTGAATGGAAGAGCCCACCGAACCACAGCAATGGAGGAGATGGCTCAGTCCTCTGCCACTCTCTTGAGTGGCAGTGGCTTGGAGACTATATCAGCTAACGCTAACTTGGTTAAAGATTTTCAGCAGAAACCTGATATTAAGCCTTCTTTGAATATCTCCAAGAGTCATAACCAGGGATTTTTTGCCCCACAAACATATGTAAATGTTGCAGCAGTCCAGACTGATTACTTGGACACATCATCTTCAGCAACTTCGGTTTGCTTGTCACAGAATGACCACTTACAGCAGAATAACAACCCATTGTCTTTTAATCAGCCATCAATGATGTTCAGAGACACGAGTCAAGATAGAGAAGCTCAGGCAGACCCCAGGAACAATGTTCAGTTTGGTACTAACATTGATAGCCAATTGGGGATACCTATGTTGCCAGACCCCATACTTTCAAAGGGCATGGTGGGATCAGGGAAGGAGTTCTCAAATAATCTCTCTTCAGGAGGTCTGCTTGCCAACTATGAAAATCCCAAAGATGCTCAGCAGGATCTTTCATCCTCAATTGTTTCACAGTCATTTGGAGTTCCAGATATGGCATTCAATTCTATTGATTCCGCAATAAACGATAGCAGCTTCTTGAACAGGGGTCCATGGGCCCCAGCACCTCAATTTCAGCGGATGCGGACATATACGAAGGTGTATAAGCGAGGAGCAGTAGGGAGATCCATTGATATCACCCGTTATTCAGGCTATGATGAGCTTAAACAAGATTTGGCTCGTAGGTTTGGTATAGAGGGACAGCTGGAGGACCGACAGAGGATAGGCTGGAAACTCGTGTACGTGGATCATGAGAATGACGTTCTGCTAGTGGGGGATGATCCTTGGGAGGAGTTTGTGAACTGTGTACGCTGCATCAAGATCCTTTCTCCTCAAGAAGTCCAGCAGATGAGCTTGGATGGAGATATTGGTAACAGTGTACTTCAGAATCAAGCCTGTAGTAGTTCTGATGGTGGCAATGCTTAA | 3105 | 47.02 | MKAPTNGAAAAATAAPNPCEGEKKSINPELWQACAGPLVNLPPAGTLVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSRLLCILHNVTLHADPETDEVYAQMTLQPVPAYDKESLLRSDLALKTNKPQTDFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAAYSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESSDLENLFKRTMPWLGDDICMKDPQAVHGLSLVQWMNMQQNPPLGNSAQPNYMHSLSGSLDQLTKLPATLNPLGSVIQPQQQLNDIAQQPRQNLMNQTLPSSQVQAQLLQQPQALVQNHNILQQQPSPPDQANQQLQMSDNQIQLQLLQKLQQQQQSLLAQQSTMQQTAQLTQLQDPQRQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKLQQQQPGMLPELPGHVVLPPMTATNQLSTAGSSLLTGAAGAGQSGITDDVPSCSTSPSTNNCPNVIQPILNGRAHRTTAMEEMAQSSATLLSGSGLETISANANLVKDFQQKPDIKPSLNISKSHNQGFFAPQTYVNVAAVQTDYLDTSSSATSVCLSQNDHLQQNNNPLSFNQPSMMFRDTSQDREAQADPRNNVQFGTNIDSQLGIPMLPDPILSKGMVGSGKEFSNNLSSGGLLANYENPKDAQQDLSSSIVSQSFGVPDMAFNSIDSAINDSSFLNRGPWAPAPQFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDIGNSVLQNQACSSSDGGNA* | 1035 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13984913 | 13992724 | + | Vvi11g810 | Vvi11g810 | 772251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi11g810 | 1034 | Gene3D | - | 131 | 234 | IPR015300 | - | |
Vvi11g810 | 1034 | ProSiteProfiles | PB1 domain profile. | 922 | 1006 | IPR000270 | GO:0005515 | |
Vvi11g810 | 1034 | Pfam | AUX/IAA family | 921 | 1007 | IPR033389 | - | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR | 514 | 1028 | - | - | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR | 468 | 516 | - | - | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR | 1 | 474 | - | - | |
Vvi11g810 | 1034 | CDD | B3_DNA | 132 | 224 | IPR003340 | GO:0003677 | |
Vvi11g810 | 1034 | ProSiteProfiles | B3 DNA-binding domain profile. | 133 | 235 | IPR003340 | GO:0003677 | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 474 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 468 | 516 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g810 | 1034 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 514 | 1028 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Vvi11g810 | 1034 | MobiDBLite | consensus disorder prediction | 611 | 633 | - | - | |
Vvi11g810 | 1034 | Gene3D | - | 297 | 368 | - | - | |
Vvi11g810 | 1034 | SMART | B3_2 | 133 | 235 | IPR003340 | GO:0003677 | |
Vvi11g810 | 1034 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vvi11g810 | 1034 | Pfam | Auxin response factor | 259 | 342 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Vvi11g810 | 1034 | Pfam | B3 DNA binding domain | 133 | 234 | IPR003340 | GO:0003677 | |
Vvi11g810 | 1034 | Coils | Coil | 539 | 559 | - | - | |
Vvi11g810 | 1034 | Gene3D | - | 917 | 1011 | - | - | |
Vvi11g810 | 1034 | SUPERFAMILY | CAD & PB1 domains | 935 | 1000 | - | - | |
Vvi11g810 | 1034 | MobiDBLite | consensus disorder prediction | 666 | 687 | - | - | |
Vvi11g810 | 1034 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 262 | IPR015300 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13757 | PF02309 | AUX_IAA | 4.00E-07 | CL0072 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi11g810 | - | - | vvi:100263801 | 1903.64 |