Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g810 ATGAAGGCGCCTACGAACGGTGCTGCGGCTGCGGCGACGGCAGCCCCGAATCCATGCGAAGGAGAGAAAAAGAGCATCAACCCAGAGCTATGGCAGGCGTGCGCCGGACCTCTAGTGAACTTGCCGCCGGCGGGGACGCTCGTCGTCTATTTTCCACAAGGCCACAGTGAACAGGTTGCAGCATCTATGAAGAAAGATGTGGACGCTCAAATCCCAAACTATCCGAATCTTCCCTCGAGGCTGCTATGCATCCTCCATAATGTCACTTTGCATGCGGATCCGGAAACCGATGAAGTATATGCTCAGATGACACTCCAACCAGTTCCTGCTTATGACAAGGAATCATTGTTGAGATCAGACCTTGCACTCAAGACAAATAAACCACAAACAGATTTTTTCTGTAAAACTTTGACAGCAAGTGACACAAGCACACATGGAGGTTTCTCGGTACCACGCCGTGCAGCAGAGAAGATTTTCCCTCCTCTTGATTTCTCTATGCAACCACCTGCGCAAGAACTTGTGGCAAAGGACTTGCATGATAATGTATGGACCTTTCGTCATATCTACCGTGGGCAACCAAAACGCCACTTGCTGACGACAGGGTGGAGCCTTTTTGTTAGTGGAAAGAGGCTTTTTGCAGGTGACGCAGTCTTGTTTATTAGGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGGCGGGCTAACAGGCAACCCACCAATTTATCATCATCAGTTTTGTCAAGTGATAGTATGCACATTGGGATCCTAGCGGCAGCAGCCCATGCAGCTGCAAACAATAGCCCTTTTACTGTGTTTTACAATCCAAGGGCTAGCCCATCTGAATTTGTTATCCCTTTAGCCAAGTACTACAAGGCAGCCTACAGCAACCAAATATCTCTTGGCATGCGCTTCCGGATGATGTTTGAAACCGAAGAGTCGGGAACAAGAAGGTACATGGGTACAATTACAGGTATCAGTGATCTAGATCCTGTGAGATGGAAGAACTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAACGGAGGAACCGTGTCTCAATCTGGGAGATTGAACCAGTGACAGCCCCATTTTTTATCTGTCCTCCTCCATTCTTCCGATCAAAACGTCCGAGGCAACCAGGAATGCCAGATGATGAATCTTCTGATCTAGAGAATCTTTTCAAAAGGACAATGCCTTGGCTTGGTGATGATATCTGCATGAAAGATCCCCAGGCTGTCCATGGCCTGAGCTTAGTTCAATGGATGAACATGCAGCAAAACCCTCCCTTGGGTAACTCTGCACAACCAAACTACATGCATTCCTTATCAGGGTCTCTTGATCAGCTCACAAAGCTGCCTGCAACATTGAATCCATTGGGCTCTGTTATACAGCCACAGCAACAGTTGAATGATATTGCTCAGCAACCGAGGCAAAATTTGATGAATCAAACTCTACCCTCAAGCCAGGTTCAGGCTCAACTTCTGCAGCAGCCTCAAGCTCTGGTCCAAAACCACAATATTCTTCAGCAGCAACCATCTCCACCTGATCAAGCAAACCAACAATTGCAAATGTCTGACAATCAAATTCAGCTTCAACTGTTACAGAAGCTTCAGCAGCAACAGCAGTCCCTTCTAGCACAGCAGTCAACAATGCAACAAACTGCTCAACTTACTCAACTCCAAGATCCACAGAGGCAGCTCTTAGATGTGTCTCAGAACTTCTCCAGGTCTGTTGCATCTGGCCAAATACTGGAAATGCCTCAAGCAACATCCACCTCGCTCCCGCAATCGCTTGTTATTCCGCAGCAGATAACAAAGAGTAACAGCCAGACAAATGTTCGATTTTCTCATCCACCTCAGCAGCCAAAGCTTCAACAGCAGCAGCCTGGCATGCTGCCTGAATTGCCTGGGCATGTGGTACTTCCCCCAATGACAGCAACTAATCAGCTTTCCACTGCTGGAAGCAGTTTGCTGACTGGTGCTGCAGGAGCAGGGCAATCTGGGATTACCGATGATGTTCCATCTTGCTCCACCTCACCATCCACTAACAACTGCCCAAATGTAATTCAACCAATCTTGAATGGAAGAGCCCACCGAACCACAGCAATGGAGGAGATGGCTCAGTCCTCTGCCACTCTCTTGAGTGGCAGTGGCTTGGAGACTATATCAGCTAACGCTAACTTGGTTAAAGATTTTCAGCAGAAACCTGATATTAAGCCTTCTTTGAATATCTCCAAGAGTCATAACCAGGGATTTTTTGCCCCACAAACATATGTAAATGTTGCAGCAGTCCAGACTGATTACTTGGACACATCATCTTCAGCAACTTCGGTTTGCTTGTCACAGAATGACCACTTACAGCAGAATAACAACCCATTGTCTTTTAATCAGCCATCAATGATGTTCAGAGACACGAGTCAAGATAGAGAAGCTCAGGCAGACCCCAGGAACAATGTTCAGTTTGGTACTAACATTGATAGCCAATTGGGGATACCTATGTTGCCAGACCCCATACTTTCAAAGGGCATGGTGGGATCAGGGAAGGAGTTCTCAAATAATCTCTCTTCAGGAGGTCTGCTTGCCAACTATGAAAATCCCAAAGATGCTCAGCAGGATCTTTCATCCTCAATTGTTTCACAGTCATTTGGAGTTCCAGATATGGCATTCAATTCTATTGATTCCGCAATAAACGATAGCAGCTTCTTGAACAGGGGTCCATGGGCCCCAGCACCTCAATTTCAGCGGATGCGGACATATACGAAGGTGTATAAGCGAGGAGCAGTAGGGAGATCCATTGATATCACCCGTTATTCAGGCTATGATGAGCTTAAACAAGATTTGGCTCGTAGGTTTGGTATAGAGGGACAGCTGGAGGACCGACAGAGGATAGGCTGGAAACTCGTGTACGTGGATCATGAGAATGACGTTCTGCTAGTGGGGGATGATCCTTGGGAGGAGTTTGTGAACTGTGTACGCTGCATCAAGATCCTTTCTCCTCAAGAAGTCCAGCAGATGAGCTTGGATGGAGATATTGGTAACAGTGTACTTCAGAATCAAGCCTGTAGTAGTTCTGATGGTGGCAATGCTTAA 3105 47.02 MKAPTNGAAAAATAAPNPCEGEKKSINPELWQACAGPLVNLPPAGTLVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSRLLCILHNVTLHADPETDEVYAQMTLQPVPAYDKESLLRSDLALKTNKPQTDFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAAYSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESSDLENLFKRTMPWLGDDICMKDPQAVHGLSLVQWMNMQQNPPLGNSAQPNYMHSLSGSLDQLTKLPATLNPLGSVIQPQQQLNDIAQQPRQNLMNQTLPSSQVQAQLLQQPQALVQNHNILQQQPSPPDQANQQLQMSDNQIQLQLLQKLQQQQQSLLAQQSTMQQTAQLTQLQDPQRQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKLQQQQPGMLPELPGHVVLPPMTATNQLSTAGSSLLTGAAGAGQSGITDDVPSCSTSPSTNNCPNVIQPILNGRAHRTTAMEEMAQSSATLLSGSGLETISANANLVKDFQQKPDIKPSLNISKSHNQGFFAPQTYVNVAAVQTDYLDTSSSATSVCLSQNDHLQQNNNPLSFNQPSMMFRDTSQDREAQADPRNNVQFGTNIDSQLGIPMLPDPILSKGMVGSGKEFSNNLSSGGLLANYENPKDAQQDLSSSIVSQSFGVPDMAFNSIDSAINDSSFLNRGPWAPAPQFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDIGNSVLQNQACSSSDGGNA* 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13984913 13992724 + Vvi11g810 Vvi11g810 772251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g810 1034 Gene3D - 131 234 IPR015300 -
Vvi11g810 1034 ProSiteProfiles PB1 domain profile. 922 1006 IPR000270 GO:0005515
Vvi11g810 1034 Pfam AUX/IAA family 921 1007 IPR033389 -
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 514 1028 - -
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 468 516 - -
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 1 474 - -
Vvi11g810 1034 CDD B3_DNA 132 224 IPR003340 GO:0003677
Vvi11g810 1034 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 474 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 468 516 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g810 1034 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 514 1028 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi11g810 1034 MobiDBLite consensus disorder prediction 611 633 - -
Vvi11g810 1034 Gene3D - 297 368 - -
Vvi11g810 1034 SMART B3_2 133 235 IPR003340 GO:0003677
Vvi11g810 1034 MobiDBLite consensus disorder prediction 1 22 - -
Vvi11g810 1034 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi11g810 1034 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Vvi11g810 1034 Coils Coil 539 559 - -
Vvi11g810 1034 Gene3D - 917 1011 - -
Vvi11g810 1034 SUPERFAMILY CAD & PB1 domains 935 1000 - -
Vvi11g810 1034 MobiDBLite consensus disorder prediction 666 687 - -
Vvi11g810 1034 SUPERFAMILY DNA-binding pseudobarrel domain 121 262 IPR015300 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13757 PF02309 AUX_IAA 4.00E-07 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g810 - - vvi:100263801 1903.64